Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01571 atggaagagagGAAGTTTGTGTGCAAGTATTGCAACAAAAAATTCCCTTGTGGGAAGTCTCTGGGAGGTCACATCAGGACCCATATGAATGAACATTCAGCTCAAAATCATAATGAAGAAAAGCGTAATGCTGATAGGATCAAGTTCGACGCTtcaaggaagaggaagaaagatttggggTCTGAAGCAgcagctgctgctgctgctgctgctgatgCAGGGAACTACATTTATGGTCTCAGAGAGAATCCCAAGAAGACTATGAGGTTTGTGCATTCCAATACCGGTACTTTGCATCAGGAGAAGTTCTGCAAAGAATGTGGCAAGGGTTTTCCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGCCACTCGGAGAAGGAGAAGGGAAGCAGTAAGCTCGAGAGCAATTCTGGGTTCGGTGAGAAGCAGAAATTGATAATGGATAGTCAATCTGATACTGAGACTTCTGCTCCAACCAATCAAAGGAGATCGAAGAGAACGAGGGTCAAGACACTTAATAATCATCCTTCTCCTGGTCCTTTGGGGAATGGTTCTTCGTCTGTGTCAGAGGTGGAGCAGGAACAAGAAGAGGTTGCCAGGTGTTTGATGTTATTATCCAAAGACTCTAGCTATAGGGGTCGTTTTGCTATGTTAACAGATTCTTCTGATAACAATTCAGTTGTTTTAGAGGCTAAATCGCCGTCTGTTGATACTAGAATTACTGTCAATAATGGTAAGAACTCTGTCTCCAGTGCTTATGAGCTTGTGGAGAAGAAGGTAACCAAAGAGATGAAGTTAAAGTCTGCTGAGATTGCTGTTTCTGACAATTCAGATTCTGGGTATTTTAGATATGGTCCCAGGAATTTTGGTTCAGATGTTTCAGTTGATGGGTTTTTCAAAAATCGTAACTTGCACGAGCCCAAAGTGGAACGTGGGTCTGAATTTGTTGAGCCTTATTGTGCTGAAACAGCGAAGATTCTGAACAAATGCAGAAACAGAAACACTGCATCCAGGAAATTAGAGCTGGGGGATGTGGAATATGATGAACGTGATGGAGCCAAGAGGaagtttaattcaaaaaacGTTTCTTTTAATCATAACTCAACTGCAGTTTCCTGCAAGAAGACAGCAAATGAGTCTCTCAAAGAAGAAATCTATGAGAATGGTGGAAAGGAATGGATGAGGTACGAGTGCTTGAGCAGCGAAAGGGTCAATGGCTCTTATGATTCAGCATATGAGAGTGATGAGAACAGCACAGACACTGATTCCTATCCTGCTGTGAAGCTCCACGGCTCTAAGGCAGCCCTCAATCAGAAGAAAACCAGCATCGCcaagaagaaattgatgtCAAAGAAAAGCAGAGGACATGAATGCCCAGTTTGTCACAAGATTTTCAAGTCAGGCCAAGCATTAGGAGGTCACAAAAGGTCCCATTTTGTTGGTAGTTCTGAAGAAAATACTCTGGTAATAAAACAAGGTCCAGCTGCTGTTCCTTGCCTAATTGATCTCAACCTACCTGCTCCTGTTGATGAATA 1538 0.4005 MEERKFVCKYCNKKFPCGKSLGGHIRTHMNEHSAQNHNEEKRNADRIKFDASRKRKKDLGSEAAAAAAAAADAGNYIYGLRENPKKTMRFVHSNTGTLHQEKFCKECGKGFPSLKALCGHMACHSEKEKGSSKLESNSGFGEKQKLIMDSQSDTETSAPTNQRRSKRTRVKTLNNHPSPGPLGNGSSSVSEVEQEQEEVARCLMLLSKDSSYRGRFAMLTDSSDNNSVVLEAKSPSVDTRITVNNGKNSVSSAYELVEKKVTKEMKLKSAEIAVSDNSDSGYFRYGPRNFGSDVSVDGFFKNRNLHEPKVERGSEFVEPYCAETAKILNKCRNRNTASRKLELGDVEYDERDGAKRKFNSKNVSFNHNSTAVSCKKTANESLKEEIYENGGKEWMRYECLSSERVNGSYDSAYESDENSTDTDSYPAVKLHGSKAALNQKKTSIAKKKLMSKKSRGHECPVCHKIFKSGQALGGHKRSHFVGSSEENTLVIKQGPAAVPCLIDLNLPAPVDE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01571 512 ProSitePatterns Zinc finger C2H2 type domain signature. 459 479 IPR013087 -
Bva08g01571 512 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 512 - -
Bva08g01571 512 MobiDBLite consensus disorder prediction 172 193 - -
Bva08g01571 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Bva08g01571 512 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bva08g01571 512 SUPERFAMILY beta-beta-alpha zinc fingers 103 479 IPR036236 -
Bva08g01571 512 Pfam C2H2-type zinc finger 104 126 - -
Bva08g01571 512 Pfam C2H2-type zinc finger 457 479 - -
Bva08g01571 512 Pfam C2H2-type zinc finger 6 29 - -
Bva08g01571 512 SUPERFAMILY beta-beta-alpha zinc fingers 2 33 IPR036236 -
Bva08g01571 512 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 512 - -
Bva08g01571 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 457 479 IPR013087 -
Bva08g01571 512 Gene3D Classic Zinc Finger 1 68 - -
Bva08g01571 512 MobiDBLite consensus disorder prediction 126 194 - -
Bva08g01571 512 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Bva08g01571 512 SMART c2h2final6 102 124 IPR013087 -
Bva08g01571 512 SMART c2h2final6 6 28 IPR013087 -
Bva08g01571 512 SMART c2h2final6 457 479 IPR013087 -
Bva08g01571 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Bva08g01571 512 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01571 Bva-Chr8 8256505 8258816 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva08g01571 zf-C2H2_6 3.8e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01571 08 8256505 8258816 Bva08g01571 08 8256505 8258816 ECH