Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00645 ATGATCCAAGAACTGTTAGGAGGTGCTGGCTTTGTACCAGGAGAAAGGAAATTCTCCATTAACGGAGGGGTTTTAGCTCCCACACCATCTCCTAATTCTTTCCCTTCTTCTCCATGTCCTAATTCTTCCACAACCAGCTCCAGCACCACTAACAGTATTTCCGCTACTAGCACCACTGCTACCTCGTCAAATTCAGATAACCAAAATCTGAGGTGCCCACGTTGTGATTCTTCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAGACATGTCGCCGGTACTGGACAAAAGGCGGTGCTCTAAGGAATGTTCCAATCGGAGGTGGTTGCCGGAAAAACAAGAACGTTGGCATATCCAACACCGTGGCAAAGGCGAGTGTAGCTAAGGTGAAAACTGTTGCATCTGAGCTTGGGAGGTCAGGAATTGGGGGTGGATTTGATCATGAGCTTCCATCAAGTCCTGTCCTATGGGGTTCGCCACAAAATTCCCATCTGTTGGCTTTGCTGAGAGCTggacaaaaccaaaaccctaaccctaacccTAGTCTTCTGTCCAATGGAATTGCTGTGAAGGAAGAAGGGCACTTGATGGGAACTCAAATGGTGATGACTGAGCCATTGGTTGCAAATGGGGTATTATTAAATGCTCGAGCCCTAGATTTTGACCCTATTGGACAAGTTCCTTCTCTTGGTCTGTGCAGCTCTTTCTGGAGAAACAACCAAGATCAACCTCAACAGCAAAATGGTAACTTTGTACTTGGTGAACCTCAAAACAGTGGAATTCAAGAACTCTGCCAGAGGCTCAGGTCATCATCAACTAATTATTGTGGTGAAAGCCCAACAATGTTTCTGGGCAACGTGACTTCTTCGTCATCTTCCAGCTCTTCTTTATCCATATTGGAGTCAGCTCCGGTTGCTGGGGGTGAATTGGGATACTGGAATTCAACCTTTTCGTGGTCTGATCTTCCCACAACCAATGGTGCATATCCAta 1019 0.4485 MIQELLGGAGFVPGERKFSINGGVLAPTPSPNSFPSSPCPNSSTTSSSTTNSISATSTTATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNVGISNTVAKASVAKVKTVASELGRSGIGGGFDHELPSSPVLWGSPQNSHLLALLRAGQNQNPNPNPSLLSNGIAVKEEGHLMGTQMVMTEPLVANGVLLNARALDFDPIGQVPSLGLCSSFWRNNQDQPQQQNGNFVLGEPQNSGIQELCQRLRSSSTNYCGESPTMFLGNVTSSSSSSSSLSILESAPVAGGELGYWNSTFSWSDLPTTNGAYP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00645 339 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Bva08g00645 339 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Bva08g00645 339 MobiDBLite consensus disorder prediction 29 70 - -
Bva08g00645 339 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Bva08g00645 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 337 IPR045174 GO:0003700|GO:0006355
Bva08g00645 339 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 20 337 - -
Bva08g00645 339 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00645 Bva-Chr8 3356389 3357775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00645 70 156 C2C2-Dof Transcription Factor Family AT5G60200 63.218 2.43e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva08g00645 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00645 - - qsu:112033100 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00645 08 3356389 3357775 Bva11g01678 11 15227965 15229268 PCT