Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01530 AtgattgttttaaattatgttatttccaCTTCAATTCAAAGGAAGTGTTTTTCCGCATTCTCAATTTGCAGAGCCCATTTCATCAATTCATGCAAGCAACGAATGCTAATTAGACTGCTCCATTTGAAAAGTCCCTCAGAACTCCAAAAAAATTACGAGTTTTGCTTTCAAGACAGTGTCATTCTTTTACAACACTTGAGGGATAATCAGGACGTAAATTTTGGCCGATCACTCCATTCTTTGTTCATCAAAAGTGGGCTTGATAGAGACGTCTTTGTACAGAATAATATGATTAGGTTTTATGGGGATATAGGTAACCTGGAAAATGCTCATCTtatgtttgatgaaattccTGAACCAAGTTTAATTTCCTGGACAAGTTTGGTCTCTTCTTACGTGCATGCTGGGCAACATGAAATGGGTCTTCActtgttttctctcttgtgCCAATCTAGGTTGCGGCCAAATGAGTTTGGTTTCTCCGTGGCGCTCAAGGCATGTAGACTTATGGGAGATACTCTTATGGGTAGACTGGTTCATGGCCTAATACTTAAAAGTGGTTTTCAATCTGACAGCTTCTGTAATGCCTCCATTCTTCACATGTATGCGGACTTTGGAGATGTTGAGCATTCGAGAAAGTTGTTTGATGGGGTTCCTTTGGGAGAAAGATCTGAGGCCTTATGGAATACTTTGCTGAATGCTTATGTGCGGAAGTGTGATGTAAAGGGAGCTCTGCAGTTGTTTCATCAGATGGGTCATTCTGCGATATCACCAAATTGTTTCACTTACACAATCCTTATGAAACCCTGTGCTGATTTGTTGGATTTTGTGCTGGCAATGTGTATTCATTGCCAAACTGTGAAGATTGGGATTGAACATGATGTTGTGATGGGTGGAGCTCTAGTTGACACCTATGCAAAACTGGGATTCTTAGATGATGCTTGTAAAGTGTTTCAAATTCTTGAGGAGAAGGACAATGTGGCATTATGTGCATTATTGGCTGGGTTTAATCAGATTGGAGGATCTAAAGGCCTTGCATTTTATATCGATTTTCTTCATGAAGGTAATAAACCTGATCCATTCACTTGTGCAAGTGTTGCTAGCTTGTGTTCAAATTTGAAGACGGAGCTGGCAGGTACCCAAGTTCATTGTAGTTTCATCAAATTTGGCTTTATGATGGATTCACATCTTGGTAGTGCCTTTATTAACATGTATGGAAGCTTTGGGATGATTTCTGATGCTTATAAATGTTTCCTAGAGGTTTACTACGAGAATGAAATCTGCATAAGTTCcatgattaataatttagtGCTGAATTCATATTATGAAAAGGCTTTAGTGTTGTTTTATGGCATGAAGGAAGCTGGTATTGCACCGAGCTATTCTACCGTCAGTTATGCTATACGAGCTTGTGGGAACCTTTATATGCTCAAAGAAGGAAGATCTTGTCATGCTTACATTATTAAAATCCCTTCAGAAGATGACTCTAAGTTGGGTTTAGAAAATTCTCTTATTGAGATGTACGCTAGATGTGGAATTATTGATGATGCAAAGTTGGTTTTCAAAGAGATGCAAATGCAAAACGAGTTTTCCTGGACTACTCTTATATCTGGATGCAGTGAATCAGGGCAAACTGGAGAAGCTTTGGGGCTGTTCCAGGATATGCTTCTTTATTCAGTATCTTCAAAACCCAGTGAATTCACTTTAGTTAGTGTTATTCAGGCTTGTGCAGAAATGGAGGCACTTAATTTAGGAAAACAGGTCCATTCTTATATCATAAAAGTAGGATTTGAATGGTATTCCTTTGTTGGAAGTGCCCTGATTAACATGTATGCAGCTTTTCAACATGAAACTTTGAATGCTTTTCAAGTATTCTCCTCCATGAAAGAGCAAGATCTTATCTCTTGGAGCATCATGCTTACTTCATGGGTCCAAAATGGTTATCACAAAGAAGCTCTTAAGCTTTTTGTGGAATTCCAAACTGTTCCCATTTTTCAGGTTGATGAGTCTATCTTATCTACCTGTGTTTCGGCTGCTGCTGGCTTAGCAGCATCGGAGATAGGCAAATGTTTCCATTCCTGGGTTATCAGACTTGGCTTTGAAAATGATCTTCACGTGGCTTCTTCCATTATAGACATGTATAGTAAATGTGGAAATATTAAAGATGCCCATAAGTTTTTCAATGCTGTCAGACATCATAATTTAGTATCTTGGACAGCTATGATATATGGTTATGCTTATCATGGGCTTGGGAAAGAAGCTATTGACCTGTTTAATGAGGCTAAAGAAACGGGGTTGGAACCTGATGGAGTCACCTTCACTGGGGTTTTGACTGCATGTAGCCATGCTGGACTAGTCAGTGAAGGTTGGGAACTTTTCCAGTACATGAGAAGCAAATACAACTGGAAAGTAACCATGAATCATTATGCTTGCATGGTTGATCTCCTTGGTCGAGCGGCACAGTTGGAAGAAGCGGAGGCTTTGATAAAGGAAGctccattttcttcaaaatctctTCTTTGGAAGACATTGTTGGGTGCTTGTTGCAAACATGAGAATGTTGAAGCAGGAAACCGAATATCAAAGATGATAGGAGAGATAGAACTGAATGAACCCTCAACTTTTGTTCAACTTTCTAACATCTATGCATCAGTATCTATGTGGAAAAATGCCATAGAACTGAGAAACAAAATGATAGAGGGGAGCGTTAATAAGCAACCTGGCAGTAGCTGGATTCAGGTGGCAGGTta 2750 0.3818 MIVLNYVISTSIQRKCFSAFSICRAHFINSCKQRMLIRLLHLKSPSELQKNYEFCFQDSVILLQHLRDNQDVNFGRSLHSLFIKSGLDRDVFVQNNMIRFYGDIGNLENAHLMFDEIPEPSLISWTSLVSSYVHAGQHEMGLHLFSLLCQSRLRPNEFGFSVALKACRLMGDTLMGRLVHGLILKSGFQSDSFCNASILHMYADFGDVEHSRKLFDGVPLGERSEALWNTLLNAYVRKCDVKGALQLFHQMGHSAISPNCFTYTILMKPCADLLDFVLAMCIHCQTVKIGIEHDVVMGGALVDTYAKLGFLDDACKVFQILEEKDNVALCALLAGFNQIGGSKGLAFYIDFLHEGNKPDPFTCASVASLCSNLKTELAGTQVHCSFIKFGFMMDSHLGSAFINMYGSFGMISDAYKCFLEVYYENEICISSMINNLVLNSYYEKALVLFYGMKEAGIAPSYSTVSYAIRACGNLYMLKEGRSCHAYIIKIPSEDDSKLGLENSLIEMYARCGIIDDAKLVFKEMQMQNEFSWTTLISGCSESGQTGEALGLFQDMLLYSVSSKPSEFTLVSVIQACAEMEALNLGKQVHSYIIKVGFEWYSFVGSALINMYAAFQHETLNAFQVFSSMKEQDLISWSIMLTSWVQNGYHKEALKLFVEFQTVPIFQVDESILSTCVSAAAGLAASEIGKCFHSWVIRLGFENDLHVASSIIDMYSKCGNIKDAHKFFNAVRHHNLVSWTAMIYGYAYHGLGKEAIDLFNEAKETGLEPDGVTFTGVLTACSHAGLVSEGWELFQYMRSKYNWKVTMNHYACMVDLLGRAAQLEEAEALIKEAPFSSKSLLWKTLLGACCKHENVEAGNRISKMIGEIELNEPSTFVQLSNIYASVSMWKNAIELRNKMIEGSVNKQPGSSWIQVAG 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01530 916 Pfam PPR repeat family 734 781 IPR002885 -
Bva07g01530 916 Pfam PPR repeat family 227 271 IPR002885 -
Bva07g01530 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Bva07g01530 916 TIGRFAM PPR: pentatricopeptide repeat domain 123 157 IPR002885 -
Bva07g01530 916 TIGRFAM PPR: pentatricopeptide repeat domain 736 769 IPR002885 -
Bva07g01530 916 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Bva07g01530 916 TIGRFAM PPR: pentatricopeptide repeat domain 530 557 IPR002885 -
Bva07g01530 916 TIGRFAM PPR: pentatricopeptide repeat domain 428 460 IPR002885 -
Bva07g01530 916 TIGRFAM PPR: pentatricopeptide repeat domain 771 799 IPR002885 -
Bva07g01530 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Bva07g01530 916 PANTHER - 174 372 - -
Bva07g01530 916 PANTHER - 562 914 - -
Bva07g01530 916 PANTHER - 321 557 - -
Bva07g01530 916 PANTHER - 60 219 - -
Bva07g01530 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Bva07g01530 916 Gene3D Tetratricopeptide repeat domain 581 694 IPR011990 GO:0005515
Bva07g01530 916 Gene3D Tetratricopeptide repeat domain 46 174 IPR011990 GO:0005515
Bva07g01530 916 Gene3D Tetratricopeptide repeat domain 498 580 IPR011990 GO:0005515
Bva07g01530 916 Gene3D Tetratricopeptide repeat domain 343 496 IPR011990 GO:0005515
Bva07g01530 916 Gene3D Tetratricopeptide repeat domain 175 342 IPR011990 GO:0005515
Bva07g01530 916 Gene3D Tetratricopeptide repeat domain 705 915 IPR011990 GO:0005515
Bva07g01530 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 734 768 IPR002885 -
Bva07g01530 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 769 799 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 300 324 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 123 149 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 530 556 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 634 658 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 430 457 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 708 730 IPR002885 -
Bva07g01530 916 Pfam PPR repeat 502 526 IPR002885 -
Bva07g01530 916 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Bva07g01530 916 Pfam E motif 851 913 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01530 Bva-Chr7 15006116 15008866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01530 240 915 Glycoside Hydrolase AT3G49170 33.043 4.65e-114 368