Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01522 ATGGCTGCGGTTGCTGAGGTTTCCGTTGATGCAGCAGCTGTCAACAAGTTGGACTCCATACCCAAATCCGATTCCGAATTCAATGTGCAGAAGCTCGTTGATATGTTCACAAAGTTGAATCCTTTGGCAAAAGAGTTTTTTCCTTCATCTTACTCTCATCATGATCATCCTCATCAGGACTATATTCAATTCTCACCTAACAATTTTGTGGTCAACAATAAGCCGTCAGCTAATGACAATTTCCCAAACAACCGAAGGaGAAGAAACAGTTTTAACCAGGGGAGAAGAAGGTTGAATGGAAGAACGATTAAGGCTCAGAGAGACGATAGCATAAGAAGAACTGTGTATGTTTCTGATATAGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTTAGCAGTTGTGGACAAGTAATTGATTGCCGAATCTGTGGTGACCCACATTCAGTTCTTCGTTTTGCCTTTGTGGAGTTTGCAGATGATCAAGGTGCAAGAGCAGCTTTAAATCTTGGTGGAACTGTGCTTGGATACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATTCTTCCTGTGAATCCGACATTCCTTCCTAGGTCAGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGATAAGAAGATTTCACAAGCTGAAGTTAAGAACTTCTTTGAAGCAGCTTGTGGCGAGGTTACTCGCTTGAGGCTTTTAGGGGATCACGTGCATTCAACGCGAATAGCTTTTGTGGAATTCGCAATGGCTGAAAGTGCCATTATTGCACTAAATTGTAGTGGGATGCTTTTGGGAAGCCAGCCAATCAGGGTAAGTCCTTCAAAGACACCCGTGAGACCAAGGGTCGCTCGTCCAACATCAATCTA 896 0.433 MAAVAEVSVDAAAVNKLDSIPKSDSEFNVQKLVDMFTKLNPLAKEFFPSSYSHHDHPHQDYIQFSPNNFVVNNKPSANDNFPNNRRRRNSFNQGRRRLNGRTIKAQRDDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADDQGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFEAACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGSQPIRVSPSKTPVRPRVARPTSI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01522 298 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 296 - -
Bva07g01522 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Bva07g01522 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
Bva07g01522 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
Bva07g01522 298 MobiDBLite consensus disorder prediction 75 101 - -
Bva07g01522 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Bva07g01522 298 Gene3D - 198 291 IPR012677 -
Bva07g01522 298 Gene3D - 70 189 IPR012677 -
Bva07g01522 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Bva07g01522 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Bva07g01522 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Bva07g01522 298 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
Bva07g01522 298 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Bva07g01522 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 296 - -
Bva07g01522 298 SUPERFAMILY RNA-binding domain, RBD 78 189 IPR035979 GO:0003676
Bva07g01522 298 CDD RRM2_CID8_like 206 287 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01522 Bva-Chr7 14951037 14955255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01522 97 267 Eukaryotic Initiation Factors Gene Family AT1G34140 26.519 1.91e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01522 07 14951037 14955255 Bva07g01522 07 14951037 14955255 ECH