LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva07g01278	ATGGGACTCATCTCAATGCAATTCAGATACGCAGATGAAGAACCCAGCTTCATCACGTTGAGCTCATTTCTGAGCTTATCTAAGAAGAGGTTGTTCGGTTCCTGGGAAAACTGGTGTATGATGCCAGGAAAACCTGAAATTGAAGATTGGCGAGGAGAGCGAGGTGGAAAGATGCAGTTGCCGTTGCAGCCTGCAATTTACTCTCAGCTATGGTGGCATGGAGTGGGGGAAGGTGCCTCCAAAGTATCTTCAACTGAACCTCAGAATGGTTATGTCTTGAATGGTGCCAAGCGGTCAGAAGACAATGAAGGGCTACCTGTTGGAGTTAACATTAATAAGCAGGCTCAGCTTATGGCTTCACAGACTGGAACTGGTGGGGATGTTGGCAAAGAGCACCAACACGTTAAAAATGTTCAGTCCTCAGCAGCATTTACCATGGGCAAACACCTTGGTCCAAATTCCCAGATGGAACTTATTGGTCATTCAATTGTCTTAACATCTTATCCTTATTCAGATGCACAGTATGGTGGAATCTTGACTGCATATGGGCCTCAAACTACGATAAATCCTTACCTGTACGGAATGAATCATTCTAGAATGCCTTTGCCACTTGAAATGGAGGAGGAGCCTGTTTATGTCAATGCCAAACAGTACCATGGTATCCTGAGGCGAAGACAGTCAAGAGCGAAGGCTGAGCTCGAAAAGAAAGTGATTAAAGCTAGAAAGCCATATCTTCATGAATCTCGCCACCTACATGCTATGAGAAGGGCAAGAGGCAGCGGGGGTCGCTTTGTCAATACAAAGAAGCTTGAAAATAACAATTCCAACGTCACTTCAGAAGGCGGTGCAAATCTTCCAACAATTGGGAACTCATCAACTGATCAAATGGTTCAGACTGCGCACAAAGCAAATGATTTCTCCATTGCTTACAGTAATGGTAATGGTCTGTCATCAATATACCACTCGCCATTATGTGGGAAAAGAGATGAAGATTGCTCCTTTCAAGTGCTCGGAGCCACAAATGGGGCTGTTCAATA	1037	0.4465	MGLISMQFRYADEEPSFITLSSFLSLSKKRLFGSWENWCMMPGKPEIEDWRGERGGKMQLPLQPAIYSQLWWHGVGEGASKVSSTEPQNGYVLNGAKRSEDNEGLPVGVNINKQAQLMASQTGTGGDVGKEHQHVKNVQSSAAFTMGKHLGPNSQMELIGHSIVLTSYPYSDAQYGGILTAYGPQTTINPYLYGMNHSRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHLHAMRRARGSGGRFVNTKKLENNNSNVTSEGGANLPTIGNSSTDQMVQTAHKANDFSIAYSNGNGLSSIYHSPLCGKRDEDCSFQVLGATNGAVQ	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva07g01278	345	MobiDBLite	consensus disorder prediction	266	295	-	-
	Bva07g01278	345	ProSiteProfiles	NF-YA/HAP2 family profile.	207	267	IPR001289	GO:0003700\|GO:0006355
	Bva07g01278	345	ProSitePatterns	NF-YA/HAP2 subunit signature.	212	232	IPR018362	GO:0003677\|GO:0016602
	Bva07g01278	345	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	209	264	IPR001289	GO:0003700\|GO:0006355
	Bva07g01278	345	SMART	cbf3	206	267	IPR001289	GO:0003700\|GO:0006355
	Bva07g01278	345	Gene3D	-	207	268	-	-
	Bva07g01278	345	MobiDBLite	consensus disorder prediction	264	295	-	-
	Bva07g01278	345	PRINTS	CCAAT-binding transcription factor subunit B signature	241	264	IPR001289	GO:0003700\|GO:0006355
	Bva07g01278	345	PRINTS	CCAAT-binding transcription factor subunit B signature	210	232	IPR001289	GO:0003700\|GO:0006355
	Bva07g01278	345	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	62	284	IPR001289	GO:0003700\|GO:0006355
	Bva07g01278	345	PANTHER	TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED	62	284	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva07g01278	Bva-Chr7	13543103	13546373	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Bva07g01278		CBFB_NFYA	1.2e-26	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva07g01278	07	13543103	13546373	Bva09g01291	09	7003907	7007407	ECH
	Bva07g01278	07	13543103	13546373	Bva07g01278	07	13543103	13546373	ECH