Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01118 ATGAGTCCACTGGCAGAGGTCAAGATGGAAGAGGGAAAACCTTCAGTGAGCTTAGCCAACAGTTCACAGGCTGATGGGGAACATGGGGACCTTACTGATTCTCGATTCACCGAGTTCTGCAAGAATGGACTATCATTGGATGAGAAAAGTTTTAAACGAGCAAGGAAACTGTTCATAGAGACTAAATCCATTCTACTGGCGAATATCTCATCTCTTGGTAATGGGACGTCTGAAGAAACAGAACGGTACTGGTTTTCATTTGTCCTATACATAGTCAAGAGATTGGCTGAGAACAATGGTGACAGTGGAAAGGAAGAGACTGATAACAATAGGCTTACCTTTTGCCAAATATTGAGAGCAGCAAAGCTTAACATCtcagatttttttaaagagcTTCATCAGTTTGTTGATAAGGCGGGCTCAATTTTAAGTAATCTATATGGCACCGATTGGGAAAACAGGCTCAAGGCAAAGGAATTGCAGGCCAATATTTCTCTCTTGAGAATTCTTAGCAATAAATACAAACGTGTATTTGGGGATTTCTTCTTGACAACTGATGCAAATGTTGAGGAGCAGTCAGCTGTTCCCAGGGCCACTAATTATTCATCTGAGTATCATCGTTTTGGATGGCTACTATTCTTGGTGCTTCGTGTACACGCTTTCAGCCGTTTTAAAGACTTAGTGACTTTCACCACTGGTTTAGTTTCTATATTGGCTATCTTGATCATTCATGTTCCTGTTCGGTTTCggaattttaacattaatgACTCTTCACGATTTGTCAAAAGAAGTACTAAAGGTGTGGACCTCGTGGGGTCTCTTTGCCAAATTTATCATACTCCAGAAGATGAGTTGAGGAAAACAATTGAGAAggccaataaattaattgcaGATATATTGAACAAGAAGCCTTGTTTGGCATCTGAATGTGAGGCTGAAAACCTGGAGAATATTGATAGAGATGGTTTGATCTATTTTAGAGATCTAATGGAAGAAACAtctttaaaatctaatttgGATATCTTAGAAAAAGATTATGACGATGCACTTCATGACAAGGGTGAACTGGATGAGAGGTTGTTCATAAATGAAGATGATAGCTTATTAGTTTCAGGAAGCTCGTCTGGAGGTTCTATGTCTATAAATGGTGTTAAGAGGAAATTTGATTCCCTGGCATCCCCTACAAAGACAATTACAAGTCCACTCTCTCCCTACCGCTCTCCTGCTTctcattcaaattcaaagatgGCAGCCACCCCTATTACTGCTGCAATGACTACTGCAAAGTGGCTTCGTACTGTCGTATCTCCACTTCCATCAAAGCCCTCACAGGAGCTGGAGAGATTCCTCGCATCTTGTGATAGGGATGTTACTGGTGATGTGGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTGGGAGAACGGTGTGTAACCGTAAGTGTGCAAACTGCAAACCTCATGGACAATGTCTGGGCAGAGCAGCGAAGACTGGAAGCTCTGAAGTTATACTACAGGGTCTTGGAAGCAATGTGTAGAGCAGAAACCCAAAAGCATGCAACTAATTTAACCTCATTATTAACTAATGAGAGGTTTCATAGATGTATGCTTGCATGTTCTGCAGAATTGGTCCTGGCAACGCATAAAACTGTAACAATGCTGTTTCCTGCTGTGCTGGAGAGGACTGGAATCACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTTATAAGACACGAGGATTCTCTCCCAAGAGAATTAAGGCGACATCTGAATTCATTGGAGGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCGATGTATAATTCTTTGATCGTTGCTAGACCTTCCCTCTCTGCAGAAATAAATCGTCTAGGATTACTAGCTGAACCGATGCCATCAATGGATGCAATTGCAATGCAAATTAACTTCTCCTGTGGCGGGTTGCCCCCTGTCCCTTCCTTGCAGAAGCTTGAAAACTCACCAAGTCAGAATGGGGATACTAGGTCTCCCAAGCGACTCTGCACGGAGTATCGAAATGTGCTAGCAGAGCGGAATTCCTTTACCTCACCAGTGAAGGATCGGCTTCTGCCCTTCAGTAATGTTAAGTCTAAGCTACCCCTTCCTCCTTTGCAATCAGCCTTTGCAAGTCCGACAAGACCAAATCCAGGAGGTGGAGGGGAAACTTGCGCTGAAACTGGGATCAATATCTTTTTTGGAAAGATCAATAAGTTGGCAGCAGTCAGAGTAAGTGGCATGGTTGAAAGGCTGCAACTGTCTCAGCAGATAAGGGAGAATGTATACCATCTTTTCCAACAAATCTTAAGTCAACGAacatctcttttctttaacCGCCATATTGATCAAATCATCCTTTGTTGTTTCTATGGAGTTGCAAAGATTTCTCAATTGAGCCTAACTTTTAGGGAGATTATTTATAACTATAGGAAGCAACCACAATGCAAACCTCAAGTTTTCCGTAGTGTATATGTTGATTGGTCATTGGCACGCTGCAATGGGaaaacaggACAAGAGCATGTTGATATCATTGCATTTTACAATGAAATATTCATTCCCTCTGTGAAGCCTCTGCTGGTTGAGCTTGGTCCCGGAGGGACAACTATGAGAAGTAACCAGACACCTGAAGTgaacaataaaaatgatgGGCATGCAGTTCAGTGTCCTGGATCTCCTAAGATATCTCCTTTTCCAAGCCTTCCTGATATGTCTCCCAAAAAAGTTTCTGCAGTACACAATGTGTATGTCTCTCCATTGCGGTCATCTAAGATGGATGCTCTAATATTACATAGCTCGAAAAGTTACTATGCTTGTGTTGGGGAGAGTACTCATGCATATCAGAGCCCTTCGAAAGACCTGAATGCCATCAATGACCGTTTGAATAGCAACAGAAAGGTCAGAGGAACCCTCAACTTCGATGATGTTGATGTTGGCTTGGTCAGTGACTCTATGGTGGCCAACAGTCTTTATCTTCAGAATGGCAGTTGTGCATCCTTATCGGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTG 3077 0.4101 MSPLAEVKMEEGKPSVSLANSSQADGEHGDLTDSRFTEFCKNGLSLDEKSFKRARKLFIETKSILLANISSLGNGTSEETERYWFSFVLYIVKRLAENNGDSGKEETDNNRLTFCQILRAAKLNISDFFKELHQFVDKAGSILSNLYGTDWENRLKAKELQANISLLRILSNKYKRVFGDFFLTTDANVEEQSAVPRATNYSSEYHRFGWLLFLVLRVHAFSRFKDLVTFTTGLVSILAILIIHVPVRFRNFNINDSSRFVKRSTKGVDLVGSLCQIYHTPEDELRKTIEKANKLIADILNKKPCLASECEAENLENIDRDGLIYFRDLMEETSLKSNLDILEKDYDDALHDKGELDERLFINEDDSLLVSGSSSGGSMSINGVKRKFDSLASPTKTITSPLSPYRSPASHSNSKMAATPITAAMTTAKWLRTVVSPLPSKPSQELERFLASCDRDVTGDVVRRAQIILQAIFPSSPLGERCVTVSVQTANLMDNVWAEQRRLEALKLYYRVLEAMCRAETQKHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARPSLSAEINRLGLLAEPMPSMDAIAMQINFSCGGLPPVPSLQKLENSPSQNGDTRSPKRLCTEYRNVLAERNSFTSPVKDRLLPFSNVKSKLPLPPLQSAFASPTRPNPGGGGETCAETGINIFFGKINKLAAVRVSGMVERLQLSQQIRENVYHLFQQILSQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVYVDWSLARCNGKTGQEHVDIIAFYNEIFIPSVKPLLVELGPGGTTMRSNQTPEVNNKNDGHAVQCPGSPKISPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALILHSSKSYYACVGESTHAYQSPSKDLNAINDRLNSNRKVRGTLNFDDVDVGLVSDSMVANSLYLQNGSCASLSGAPLKSEQPDS 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01118 1025 SUPERFAMILY Cyclin-like 427 621 IPR036915 -
Bva07g01118 1025 MobiDBLite consensus disorder prediction 1 30 - -
Bva07g01118 1025 Coils Coil 339 359 - -
Bva07g01118 1025 Gene3D - 422 609 - -
Bva07g01118 1025 Gene3D - 693 894 - -
Bva07g01118 1025 SUPERFAMILY Cyclin-like 741 913 IPR036915 -
Bva07g01118 1025 SMART RB_A_2 419 619 IPR002720 GO:0005634|GO:0051726
Bva07g01118 1025 Coils Coil 282 302 - -
Bva07g01118 1025 PANTHER BNACNNG22930D PROTEIN 29 1011 - -
Bva07g01118 1025 Gene3D - 205 363 - -
Bva07g01118 1025 Pfam Retinoblastoma-associated protein A domain 419 619 IPR002720 GO:0005634|GO:0051726
Bva07g01118 1025 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 29 1011 IPR028309 GO:0006357|GO:0051726
Bva07g01118 1025 Pfam Domain of unknown function (DUF3452) 106 244 IPR024599 -
Bva07g01118 1025 SMART DUF3452_2 95 244 IPR024599 -
Bva07g01118 1025 Pfam Retinoblastoma-associated protein B domain 743 870 IPR002719 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01118 Bva-Chr7 12548991 12558738 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Bva07g01118 RB_A 1.9e-63 CL0065