LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva07g01061	ATGGAAAATGAGATTGACGATGGGGAGCCCCTCAAGGACCAGAATGGATCAGAGTTGAATGACGAGGGTAATGGAGGAAGTGCAGGTGGTGTTATTCTGAAGAAAGGGCCCTGGACATCTACTGAAGATGCTATTTTGGTGGACTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGTACTCAGGCTTGTCTCGATGTGGCAAAAGCTGTCGACTGCGGTGGGCAAATCACCTGAGGCCAAATTTAAAGAAAGGGGCATTTACTGCAGAAGAAGAGCGGTTGATTGCTGAACTCCATGCCAAGATGGGAAACAAATGGGCATGCATGGCCGCACATTTGCCTGGTCGTACAGACAATGAGATAAAGAACTACTGGAATACCCGGATCAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCTGAAGTGTGTTTGCAAGCATTGCAAGAGAGTCAGATTGGCCAAAGCACTGCACGAAAAAATGATAGGGATAGAGGAAATCATGGTTCCCTGCAGAAAAGTAGTAATGAGATACATGATGCTATATTTGATAGTTTAAAGGCTAATCAGGGACTTTTACCTTGCGTACCAGAGATTCCTAATATTTCTGCTGATAGCGTTTTGCTGAAAGGTCTTGGTTCTTCTCAGTATTGTAATTTTCTGCCATCAACATTGCCTCACCATAAGCGTCTACGAGAGTCAACAACGCCATTTCTTGGTTCCAATGTTATGAACAGAAATGGGTATTATCCACTTGACCATATTCGTGATAATGCCTCAAATAAGATTGCTCAATATTTTGGAATGCATGCTCATCTTGATCCTTGTCCCTCAAAAAATTCACTATCTTATGGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAATTTCTGAGGCTGTGAAGATAGAGCTCCCTTCACTCCAATATCCTGAAACTGACCTAGGTAGCTGGGGCAGGTCTCCAACCCCACCTCCTTTAGTTGAGTCAGTTGATGTTTTCATTCAGTCTCCACGGAATAGTGCACTAGAGTCAGACTGTTCATCACCGCAGAATACTGGCCTCCTGGATGATATGCTCAATCAGGCAAAGATTATGAGCAGTTCAAAGAAACATTATTCTGAAAAGAGTTCAAATTCATCAACTGCAACTCCTGGCGATGGAGCTGACAGTGGCGCTTTTAACATGTTTGAGACAGAATGGGAAGACTACACTGAtcatatttcttcatttggtGCAACTTCAATGTTAAACGAGTGCCCTGCTATTAGTGCGACTGGAAATTCATTGGATGAACAACTACCAGCTCAAATCTTTAGTGGCAACATTGCAAAACTAGAATCTGCTGAGCATGCTTGGACCTCTAACAGTGAAAATCAAAGCATGTCAATGTTCAATATCAGCCGGCCAGATTTGTTGCTTGCTTCAGATTGGATTGAGCAGAATTCTAGGAATGGACAGAACCCAGCAATCAACAAAGATGCTATGGCTACCCTACTCGGCGATGATTTAGCGACAGATTACAAGCAAATGACTGCTGGAACTTCTGCATCAAGTCAAGTTTGGGGCCTCGGTTCATGTTCTTGGAATAACATGCCTGCAGTGTGTCAAATGGCTGATCTTCTTTATAAAGACAGCCTTAAGATGTATGACTG	1676	0.4326	MENEIDDGEPLKDQNGSELNDEGNGGSAGGVILKKGPWTSTEDAILVDYVKKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWACMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQESQIGQSTARKNDRDRGNHGSLQKSSNEIHDAIFDSLKANQGLLPCVPEIPNISADSVLLKGLGSSQYCNFLPSTLPHHKRLRESTTPFLGSNVMNRNGYYPLDHIRDNASNKIAQYFGMHAHLDPCPSKNSLSYGHSLSNGNSSTSKPISEAVKIELPSLQYPETDLGSWGRSPTPPPLVESVDVFIQSPRNSALESDCSSPQNTGLLDDMLNQAKIMSSSKKHYSEKSSNSSTATPGDGADSGAFNMFETEWEDYTDHISSFGATSMLNECPAISATGNSLDEQLPAQIFSGNIAKLESAEHAWTSNSENQSMSMFNISRPDLLLASDWIEQNSRNGQNPAINKDAMATLLGDDLATDYKQMTAGTSASSQVWGLGSCSWNNMPAVCQMADLLYKDSLKMYD	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva07g01061	558	MobiDBLite	consensus disorder prediction	159	179	-	-
	Bva07g01061	558	MobiDBLite	consensus disorder prediction	1	35	-	-
	Bva07g01061	558	MobiDBLite	consensus disorder prediction	374	395	-	-
	Bva07g01061	558	PANTHER	TRANSCRIPTION FACTOR, PUTATIVE-RELATED	2	546	-	-
	Bva07g01061	558	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	83	137	IPR017930	-
	Bva07g01061	558	SUPERFAMILY	Homeodomain-like	34	129	IPR009057	-
	Bva07g01061	558	Pfam	Myb-like DNA-binding domain	35	82	IPR001005	-
	Bva07g01061	558	Pfam	Myb-like DNA-binding domain	88	131	IPR001005	-
	Bva07g01061	558	MobiDBLite	consensus disorder prediction	374	398	-	-
	Bva07g01061	558	ProSiteProfiles	Myb-like domain profile.	33	82	IPR001005	-
	Bva07g01061	558	Gene3D	-	34	87	-	-
	Bva07g01061	558	Gene3D	-	90	136	-	-
	Bva07g01061	558	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	30	82	IPR017930	-
	Bva07g01061	558	SMART	sant	87	135	IPR001005	-
	Bva07g01061	558	SMART	sant	34	84	IPR001005	-
	Bva07g01061	558	ProSiteProfiles	Myb-like domain profile.	83	133	IPR001005	-
	Bva07g01061	558	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	2	546	-	-
	Bva07g01061	558	CDD	SANT	37	82	IPR001005	-
	Bva07g01061	558	CDD	SANT	90	131	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva07g01061	Bva-Chr7	12181423	12185952	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva07g01061	10	548	MYB Transcription Factor Family	AT5G06100	42.419	1.07e-127	382

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bva07g01061		Myb_DNA-binding	6.7e-15	CL0123