Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01013 ATGTCTGAAGTGAGAGATCCGGCCATAAAGCTTTTTGGAAGGGACATTCCGGTAGAACCAATTCAGAACAACGATTCTCAGTGTGAGATTTCGCCGGTGCCTGAAGCCATGAataaatatgaagaatttaGAAGAACAGAAGTGAATACTACTTACGTTGATGTATCTAGCAAACAGAAAGATCATccagaagaaggaaaaggtaTTGGAAGgagttataaaaattcaactcTGAAAGTGGAGGCTGGAGTAAATCATAGAAGAAAGGATGACAAAActactaaaagagatatggatcatcaagaaaaaattttgaaaaagccAGACAAGGTCCTGCCATGTCCTCGCTGCAACAGCTTGGAGACAAAGTTTTGCTATTTCAACAATTATAATGTCAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACAGCTGGTGGGACAATCAGAAATGTTCCTGTGGGAGCTGGGAAGCGCAAGAATAAGCACTCAGCTTTGCAGTGCTGTGAGGTGGCTGTGGCCCCTGATGCAGTATCTGTCAACCATGCAGACTCCAACCCTGCTAGCCATATGCAGTTCTCATCCAGTGGATTTCCTGCTGCTCCTGGACTAGTCGGAGGAATGGAAAACACCACCACTTCGAGGAAAGATGCATCTCTATGTGAATCCCTTGACACTGTATTAAATCTCAATGggcagaaaaaaattgatgatggCGAGGATCCTTCCAGTTCTTCCTCAAGAGTTGCTGTTTCCGGGGAGAAGGACTGCTCAGAAAATGGAGCAGAGCAGGTAGATTTGCCACGAGACTATAATGGCTTCAGTCATTTACATCCACTTCCCTATTATCCTGTCCCTTCATGGGGTTGCCAATGGAGCCCTTGTTGGAACCCAATGGTGTTTAGGCCTAGTAGTAGTATAACTCCAAATCCTGTTTATATGGGTTCTGCAGCCATGATGACAGTTCCGCGTTTCTCTGCACCAACAATCGATATACCTGTGGctccttcttcatttttgggTTGCTTGCCAAGTTGGGTTACAGAGAAGGAAGAGTTTTCCAGTGGTATTCCATCACCTTCATCACCTGCTACCAGCAGTGGTGGTTCTGATAATAGGTCCCCAACCTTAGGAAAACATTCTAGAGATGCAAATACACAGACAGAAGATACAACAAAACAGTATCTTTGGGTACCTAAGACGCTAAGAATTAATGATCCAAAAGAGGCAGCAAAGAGTTCTATATGGTCTACTTTGGAGACAAAATCTGAACAGAATAAACCCATCATGAAAGGTGGtgtttttaaatcttttgaaCCTAAATCGGATTCCAGTTCTCAAAATAGTCCTGTTCTGAGAGCAAATCCTGCTGCTTTATCTCGCTCTGACTCATTTCAGGAAAGAATGTG 1418 0.3949 MSEVRDPAIKLFGRDIPVEPIQNNDSQCEISPVPEAMNKYEEFRRTEVNTTYVDVSSKQKDHPEEGKGIGRSYKNSTLKVEAGVNHRRKDDKTTKRDMDHQEKILKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSALQCCEVAVAPDAVSVNHADSNPASHMQFSSSGFPAAPGLVGGMENTTTSRKDASLCESLDTVLNLNGQKKIDDGEDPSSSSSRVAVSGEKDCSENGAEQVDLPRDYNGFSHLHPLPYYPVPSWGCQWSPCWNPMVFRPSSSITPNPVYMGSAAMMTVPRFSAPTIDIPVAPSSFLGCLPSWVTEKEEFSSGIPSPSSPATSSGGSDNRSPTLGKHSRDANTQTEDTTKQYLWVPKTLRINDPKEAAKSSIWSTLETKSEQNKPIMKGGVFKSFEPKSDSSSQNSPVLRANPAALSRSDSFQERM 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01013 472 MobiDBLite consensus disorder prediction 235 267 - -
Bva07g01013 472 Pfam Dof domain, zinc finger 109 166 IPR003851 GO:0003677|GO:0006355
Bva07g01013 472 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 28 472 - -
Bva07g01013 472 MobiDBLite consensus disorder prediction 54 76 - -
Bva07g01013 472 MobiDBLite consensus disorder prediction 356 395 - -
Bva07g01013 472 MobiDBLite consensus disorder prediction 442 465 - -
Bva07g01013 472 ProSitePatterns Zinc finger Dof-type signature. 114 150 IPR003851 GO:0003677|GO:0006355
Bva07g01013 472 MobiDBLite consensus disorder prediction 423 472 - -
Bva07g01013 472 ProSiteProfiles Zinc finger Dof-type profile. 112 166 IPR003851 GO:0003677|GO:0006355
Bva07g01013 472 PANTHER CYCLIC DOF FACTOR 2 28 472 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01013 Bva-Chr7 11856937 11859506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01013 1 472 C2C2-Dof Transcription Factor Family AT3G47500 34.940 4.53e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva07g01013 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01013 - - gmx:102664782 457.603