Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02145 ATGGCTCTGGAAGCTCTCAAATCTCCCACCGCCGCCGGCCCATCCTTCACTTTTGAAGATGCCAGTCTTCACTGCCTGGAGCCGTGGGCAAAGCGAAAGCGTTCCAAGCGTACCCGACTTGACCACCCTTCGTGCACCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGCCCCGACGCTGCTGTCTCCACCGCCTCGGACCGCCATAGCTCTCCTCAGGCTGTGGCTACTCCTCCTCGTGTTTCGTCTGAGTCAGCGCCAGTAGCCACCGCAGACTCTACCGCCACTGTCAAGCTCAGTTACAAGTGCTCCGTTTGCAACAAAGCCTTCTCCTCTTACCAAGCTCTCGGTGGACACAAGGCCAGTCATCGGAAACTCGCTGGGGGAGAAGACCATTCTACCTCCTCCGCTGTCACCACTACTTCTGCAAACACCACGGCTACAGCATCAGCTGGTGGAGGTAAGACTCACGAGTGTTCCATCTGCCACAAGTGCTTCCCCACCGGACAGGCCTTGGGTGGACACAAGCGTTGCCACTACGAGGGCGGTGCTGGCGGCGGCGGTAGCAGTGCTATCACTGCATCGGAAGGTGTTGGTTCTACTCATACCATCAGCCACGGCCACCGTGGCTTCGATCTCAACCTCCCCGCCATGTCGGACTTCTCGCCAAAATTCTTCGTTTCATCGGGGGACGACGAAGTCGAAAGCCCTCACCCAGCGAAAAAGCCCCGCCTACTGATGACGCCCAAGATTGAAATTGCTCAGGATCAGTG 785 0.5796 MALEALKSPTAAGPSFTFEDASLHCLEPWAKRKRSKRTRLDHPSCTEEEYLALCLIMLARGPDAAVSTASDRHSSPQAVATPPRVSSESAPVATADSTATVKLSYKCSVCNKAFSSYQALGGHKASHRKLAGGEDHSTSSAVTTTSANTTATASAGGGKTHECSICHKCFPTGQALGGHKRCHYEGGAGGGGSSAITASEGVGSTHTISHGHRGFDLNLPAMSDFSPKFFVSSGDDEVESPHPAKKPRLLMTPKIEIAQDQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02145 261 Pfam C2H2-type zinc finger 105 129 - -
Bva06g02145 261 Pfam C2H2-type zinc finger 161 184 - -
Bva06g02145 261 MobiDBLite consensus disorder prediction 136 157 - -
Bva06g02145 261 MobiDBLite consensus disorder prediction 233 261 - -
Bva06g02145 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 127 IPR013087 -
Bva06g02145 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 252 IPR044653 GO:0003700
Bva06g02145 261 SUPERFAMILY beta-beta-alpha zinc fingers 105 183 IPR036236 -
Bva06g02145 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 183 IPR013087 -
Bva06g02145 261 SMART c2h2final6 161 183 IPR013087 -
Bva06g02145 261 SMART c2h2final6 105 127 IPR013087 -
Bva06g02145 261 MobiDBLite consensus disorder prediction 67 91 - -
Bva06g02145 261 Gene3D Classic Zinc Finger 103 183 - -
Bva06g02145 261 MobiDBLite consensus disorder prediction 187 208 - -
Bva06g02145 261 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Bva06g02145 261 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Bva06g02145 261 MobiDBLite consensus disorder prediction 128 160 - -
Bva06g02145 261 PANTHER ZINC FINGER PROTEIN ZAT10 1 252 - -
Bva06g02145 261 MobiDBLite consensus disorder prediction 68 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02145 Bva-Chr6 14131734 14132929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02145 1 257 C2H2 Transcription Factor Family AT1G27730 50.936 2.70e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g02145 zf-C2H2_6 3.5e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00653 10 5627324 5628435 Bva06g02145 06 14131734 14132929 BWGD
Bva06g02145 06 14131734 14132929 Bva13g00378 13 1760047 1761083 ECH
Bva06g02145 06 14131734 14132929 Bva14g00471 14 2265342 2266353 ECH
Bva06g02145 06 14131734 14132929 Bva06g02145 06 14131734 14132929 ECH