Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02115 ATGGGTTCCTGTAGATCTTCGAGTGTGACGATCGCTGTCCTGTTGATGCTGGTGACTGTGTCGTCGGCCTTGGACATGTCGATCATCTCGTACGACAGAAGCCACGAAGACAAGTCAAGCTGGAGGAGTGACGAGGAAGTGATGGCCATGTACGAGGAGTGGCTTGTGAAGCATGGCAAGGTATACAACGCGTTgggggagaaggagaagaggtTTGAGATCTTCAAGGACAACCTTAGGTTCATCGACGAGCATAACGCTGAGAACCGAACCTACAAGGTCGGATTGAACCGATTTGCCGATCTTACCAACGAGGAGTACCGCTCCAAGTACCTGGGAACCAAGATTGATCCAAAGAGGAGAATTGCCAAGACTAGGAGCAACCGTTATGCTCCAAAACTTGGCGACAATTTGCCCGAGTCCGTTGATTGGAGGGAGAAAGGTGCCGTCGCCCCCGTCAAAGACCAAGGAAGTTGTGGGAGCTGCTGGGCATTCTCAACGGTAGGTGCAGTTGAAGGAATAAACAAGATAGTGACAGGCGATCTAATCACACTATCAGAGCAAGAATTGGTTGACTGTGATACGTCCTACAACGAAGGATGCAATGGCGGACTCATGGACTACGGCTTCGAATTCATCATCAAGAATGGTGGCATTGACACTGAAGAGGATTATCCTTACCGTGCTGTTGATGGCACGTGTGATCCAAACAGGAAAAATGCCAAGGTTGTCACTATTAATTCCTATGAAGATGTTCCCGTCAACGATGAGCGTGCTTTGAGAAAGGCTGTCGCTAATCAACCAGTAAGCGTAGCCATTGAAGGAGGTGGCAGAGCATTCCAGTTATACCAATCAGGTGTATTTACTGGAAGGTGTGGGACAGCATTGGACCATGGTGTTGTGGCAGTTGGATATGGcacagaaaatggaaaagattaTTGGATTGTGAGGAACTCATGGGGTGAGAACTGGGGAGAGAATGGATATATCAGATTGGAACGTAATCTGGACAAAGTTAGTACCGGAAAGTGTGGAATAGCTATGGAAGCTTCCTACCCCATCAAGAATGGTCCAAATCCCCCCAACCCGGGTCCCTCTCCACCTTCACCAGTGAAGCCACCAAATGTTTGTGATAATTATTATAGCTGCGCTGACGGCGCTACTTGCTGCTGTGTTTTCGAGTATGGAAAGTATTGCTTTTCCTGGGGATGCTGTCCACTCGAGAGTGCGACATGCTGCGAAGACCACAATAGTTGCTGTCCTCATGACTTCCCCGTCTGTAACGTTGAACAAGGGACTTGTTTGTTGAGCAAGGACAACCCATTTGGAGTGAAGGCATTGAAGCCAACTCCTGCTAAACATTATTGGGCTTTTGGAGGTAACAGCAAGATAATCAGTGCCTG 1403 0.4704 MGSCRSSSVTIAVLLMLVTVSSALDMSIISYDRSHEDKSSWRSDEEVMAMYEEWLVKHGKVYNALGEKEKRFEIFKDNLRFIDEHNAENRTYKVGLNRFADLTNEEYRSKYLGTKIDPKRRIAKTRSNRYAPKLGDNLPESVDWREKGAVAPVKDQGSCGSCWAFSTVGAVEGINKIVTGDLITLSEQELVDCDTSYNEGCNGGLMDYGFEFIIKNGGIDTEEDYPYRAVDGTCDPNRKNAKVVTINSYEDVPVNDERALRKAVANQPVSVAIEGGGRAFQLYQSGVFTGRCGTALDHGVVAVGYGTENGKDYWIVRNSWGENWGENGYIRLERNLDKVSTGKCGIAMEASYPIKNGPNPPNPGPSPPSPVKPPNVCDNYYSCADGATCCCVFEYGKYCFSWGCCPLESATCCEDHNSCCPHDFPVCNVEQGTCLLSKDNPFGVKALKPTPAKHYWAFGGNSKIISA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02115 467 Gene3D Granulin 375 436 IPR037277 -
Bva06g02115 467 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Bva06g02115 467 PANTHER CYSTEINE PROTEASE 31 383 - -
Bva06g02115 467 SMART Inhibitor_I29_2 51 107 IPR013201 -
Bva06g02115 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Bva06g02115 467 Pfam Granulin 388 435 IPR000118 -
Bva06g02115 467 Gene3D Cysteine proteinases 30 356 - -
Bva06g02115 467 SMART GRAN_2 377 434 IPR000118 -
Bva06g02115 467 CDD Peptidase_C1A 139 353 IPR039417 -
Bva06g02115 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Bva06g02115 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Bva06g02115 467 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Bva06g02115 467 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Bva06g02115 467 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Bva06g02115 467 SUPERFAMILY Cysteine proteinases 42 354 IPR038765 -
Bva06g02115 467 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Bva06g02115 467 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Bva06g02115 467 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 383 - -
Bva06g02115 467 SUPERFAMILY Granulin repeat 374 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02115 Bva-Chr6 13996180 13999287 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00690 10 5775757 5779465 Bva06g02115 06 13996180 13999287 BWGD
Bva06g02115 06 13996180 13999287 Bva08g00580 08 2988983 2991014 ECH
Bva06g02115 06 13996180 13999287 Bva11g01740 11 15610696 15612496 ECH
Bva06g02115 06 13996180 13999287 Bva13g00324 13 1518482 1520532 ECH
Bva06g02115 06 13996180 13999287 Bva14g00401 14 1979898 1982291 ECH
Bva06g02115 06 13996180 13999287 Bva06g02115 06 13996180 13999287 ECH