Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02103 ATGCAAGGGCAAAGGGGTACACTTGGTTCTTTGCCTGAAACCTTGGAATTTGATTGTGGATCTACATCAAGTAATGCCACTGTGGATCAGCAGATTTGCTGGAATAATATGAGGAATCCTGCAGAAAGCCGAATACCTGAATATATACTTGCACCTGGTGATATGAACACGTCATATGTGAATTCTATAAATCATCAATGGCAGAATTTGAGTGGATGGAGCTTAGGTGAGTCAAGTTCTGCTAATGCACAGAATGAGTTTAACCATAATGAGCAGAAAAGAGAACTTGGATGGTCTTCCTCAGTAAGTACTGCTGCTGTACCTGGTCCAAGGTTGGAAGAAAGGCGCTTTGAATCAACTAATGTTCTTCCATTGGGTAGTACAAATGCAAGTCCTATATACAGGCGTGGTTCTTATTCACATCCTGTGTCAcagaattttaacttaaatgcAGGTTTGGTGGACAATGACAGCAATACTAGCCAACATGCAGAGCATCCTAACACGCACAAGTCTAGTGGATCTGTAAATGAGCATCCTCCACCTCCTATTGGTTCTGCTCCTTTTCTGCTTCCTTCTGGAAGTAACAGCTTCTTGGAAGAAGATAATGATGGAAGGCCAAGGTGTTCTATGGACACTCGCCGGGTATCTTGTAAAAGAAAGGCTGTTGATGGAAGTGTTGGACAATGTTCTGATGGTGGAAGTTCTAGCTACAATCATGATATAGATAGTAGTTCCTGGCCTACTCTTCCTACTCAGGGTAGTGCAGGTAGCAGTTTACGCAGATCAGCTTCATCAGAACATGTAAATGCCAGACTTGGCCTAGGTGTGGGGGATGACTCCTCTGAAAACCTTCCTGATTCAAATGTTCGGGGGAGCTCAGAAAGTTTCCGCCGAAATCTCCGTTTGAGGATAAATCCTTCAAACCATGATTCCATTCCTCCCACTACATTCTCGTCTGGAAGTGTGGTTAGGCATTCTAATGTTTCATCCTTTCCAATGTCACAAAGGTTTCCTGTTGATAATTCTCTGGACTTGACGTCAGCACCAGCTGTGGATAGTATGATTCCCCAAAGCCAGCCCCCTGTAATTCATGTTCCTGCTTTGCCAACGAATGTGCAATCGTTTAGGTGGAGTGGTGGCTCTAGCTCAAGAAACACCCATTCATCAAGCTCAGTTATTTGTGCAGATAGAGATAGTGTACAACATGAGGAAGCAAGCTCAAGAAATATGCCTAGAAACATGTTAGAGCAACCAGTATTTGTACCTGCAACTGATTTAAGAAGTTTGGTTCGAAATCCAACAGTCAGAGCCTCAAGTAGTGCAAATTTAAGTATTTCAGGTAATGTTGCTTCTTCATCACGGGCTGGATCTAGTTCTGCTGTCAATCCTTCGTCTGCTGCAACCTGGGCTTCTCGTCCTAATCCTCCACAATACCCACGGAGGTTATCTGAATATGTTCGTCGGTCATTGTTTTCTCCTGGTTCTGAGGCTGCTGCAGGTCAGAGCAATAATTATGCTTCTTTGCGCTCTGGTCCCGCATCGTCATCTGAAGCTAGGATTTTAGCATCAGGTGCTGGTAATCAGGGACACAATCAGTCACATCCGAGATCATCTTCATGGATGGAGAGACAAGGTGATGCTGAATTTGGAATTCCATATTCATTGCATACTTTGGCCGTTGCTGGTGAAGGAAACAGCAGACTTGTATCCGAGCTTCGCAATGTTTTGCGGCTCATGCGTAGGGGTGGAAGCCTGCGATTTGAGGATGTTATGATCCTTGACCAGTCAGTATTTTCTGGAATGGCTGATCTTCATGATAGACACAGGGATATGAGACTTGATGTCGATAATATGTCCTACgagGAGTTACTGGCACTGGAAGAGCGTATTGGAAATGTGAGTACCGGATTGAGTGAGGAAACGGTATTGAAACTTCTGAAACAGATGAAGTATTCAGTTGAAACGGGATCCCAGCGTGAGTCAGAACCCTGCAGTGTTTGCCAGGAGGAATATAATGATGGAGATGATATTGGAACGCTTGATTGCGGGCATGATTACCATACCGACTGTATTAAACAATGGTTAATGCACAAGAACCTGTGTCCCATTTGCAAGACAACGGGCTTGGCAACATG 2138 0.4383 MQGQRGTLGSLPETLEFDCGSTSSNATVDQQICWNNMRNPAESRIPEYILAPGDMNTSYVNSINHQWQNLSGWSLGESSSANAQNEFNHNEQKRELGWSSSVSTAAVPGPRLEERRFESTNVLPLGSTNASPIYRRGSYSHPVSQNFNLNAGLVDNDSNTSQHAEHPNTHKSSGSVNEHPPPPIGSAPFLLPSGSNSFLEEDNDGRPRCSMDTRRVSCKRKAVDGSVGQCSDGGSSSYNHDIDSSSWPTLPTQGSAGSSLRRSASSEHVNARLGLGVGDDSSENLPDSNVRGSSESFRRNLRLRINPSNHDSIPPTTFSSGSVVRHSNVSSFPMSQRFPVDNSLDLTSAPAVDSMIPQSQPPVIHVPALPTNVQSFRWSGGSSSRNTHSSSSVICADRDSVQHEEASSRNMPRNMLEQPVFVPATDLRSLVRNPTVRASSSANLSISGNVASSSRAGSSSAVNPSSAATWASRPNPPQYPRRLSEYVRRSLFSPGSEAAAGQSNNYASLRSGPASSSEARILASGAGNQGHNQSHPRSSSWMERQGDAEFGIPYSLHTLAVAGEGNSRLVSELRNVLRLMRRGGSLRFEDVMILDQSVFSGMADLHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQMKYSVETGSQRESEPCSVCQEEYNDGDDIGTLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02103 712 MobiDBLite consensus disorder prediction 435 481 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 377 397 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 150 298 - -
Bva06g02103 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Bva06g02103 712 SUPERFAMILY RING/U-box 653 708 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 78 113 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 201 221 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 282 298 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 377 416 - -
Bva06g02103 712 MobiDBLite consensus disorder prediction 229 266 - -
Bva06g02103 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 711 IPR045191 GO:0061630
Bva06g02103 712 MobiDBLite consensus disorder prediction 150 176 - -
Bva06g02103 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 711 - -
Bva06g02103 712 SMART ring_2 665 705 IPR001841 -
Bva06g02103 712 CDD RING-H2_TTC3 664 706 - -
Bva06g02103 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 709 IPR013083 -
Bva06g02103 712 MobiDBLite consensus disorder prediction 435 473 - -
Bva06g02103 712 Pfam Ring finger domain 665 706 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02103 Bva-Chr6 13933045 13937932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02103 1 712 C3H Transcription Factor Family AT2G15530 33.784 1.36e-86 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00704 10 5848824 5854137 Bva06g02103 06 13933045 13937932 BWGD
Bva06g02103 06 13933045 13937932 Bva13g00308 13 1453197 1458374 ECH
Bva06g02103 06 13933045 13937932 Bva14g00386 14 1920363 1925687 ECH
Bva06g02103 06 13933045 13937932 Bva06g02103 06 13933045 13937932 ECH