LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g02100	aTGGCCCTTCTGCTAGACAATTGCGAGGGCATTTTACTCTCACTGGACTCTCACAAATCGGTGCCAGCTCCCTTCCTAACAAAGACATACCAGCTGGTGGATGATCCCACCACGGATCACATAGTCTCTTGGGGTGAAGACGACACCACCTTCGTCGTTTGGCGTCCCCCAGAGTTCGCCAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTCGTTCGTCAGCTTAACACCTATGGTTTTAGAAAGATTGTACCTGACAGATGGGAGTTCGCAAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGTGAGATCCATAGGAGAAAAAATGCTCAGCCTCAGCAGATAGCCATTAATCATCAAAACCTTCATCATCCCCATTCTTCACTTGGAATCAACGTCCCCgctttctttcccttctccAGGAGAGTCAGCATCTCTCCTTCCAATGATTCTGATGACCAAGCCAACTGGCCTGACTCACCGCCACTCACTTCTCAAAGACCAACAGCGGCCGCTACCGCTGTTTCTTCGGTCATTAATGGCGCTAACTACAATAGTTCCGTCACTGCGCTTTCGGAGGACAATGAAAGACTCAGGCGAAGCAACAATATGCTCGTGTCTGAGCTTGCCCACATGAAGAAGCTTTATAACGACATAATCTACTTTGTGCAGAACCATGTGAAGCCTGTGGCTCCTAGCAACTCTTACCCTTCTTCTTTGCTACCCTGCAATACACCACAACAACCGTCGGCTGTATCTACTTTAACTAGTTCTAATATTTCCATGGTGCAAAGGCCCGTGAACCAGCTTCGGGGGTTTTATTCAACCAACCCTAAGCAAGCTCCTCAAGCTCATGTTTTGAATTCCCCAACCAATACATCAAAGAGCTCCATAACCATTGTTGAAGGGCCCAGCAGTAACAGCTGCAAGACGAAGCTTTTTGGTGTATCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTATGGCTCTAATCTCATGAATATGGAGACGAACAAGACTCGTTTGGTCTTGGAAAAGGATGACCTGGGCTTGAATCTTATGCCTCCTTCCACTTGTTA	1100	0.4627	MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKNAQPQQIAINHQNLHHPHSSLGINVPAFFPFSRRVSISPSNDSDDQANWPDSPPLTSQRPTAAATAVSSVINGANYNSSVTALSEDNERLRRSNNMLVSELAHMKKLYNDIIYFVQNHVKPVAPSNSYPSSLLPCNTPQQPSAVSTLTSSNISMVQRPVNQLRGFYSTNPKQAPQAHVLNSPTNTSKSSITIVEGPSSNSCKTKLFGVSLQSKKRVHPEYGSNLMNMETNKTRLVLEKDDLGLNLMPPSTC	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g02100	366	Gene3D	-	17	115	IPR036388	-
	Bva06g02100	366	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Bva06g02100	366	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva06g02100	366	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva06g02100	366	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva06g02100	366	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva06g02100	366	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	291	365	IPR027725	-
	Bva06g02100	366	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	243	IPR027725	-
	Bva06g02100	366	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva06g02100	366	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva06g02100	366	MobiDBLite	consensus disorder prediction	154	177	-	-
	Bva06g02100	366	PANTHER	BNAC06G00310D PROTEIN	291	365	-	-
	Bva06g02100	366	PANTHER	BNAC06G00310D PROTEIN	12	243	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g02100	Bva-Chr6	13912789	13914408	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g02100	1	365	HSF	AT1G46264	54.756	3.34e-118	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bva06g02100		HSF_DNA-bind	3.2e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva10g00707	10	5872512	5874199	Bva06g02100	06	13912789	13914408	BWGD
	Bva06g02100	06	13912789	13914408	Bva06g02100	06	13912789	13914408	ECH