Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02063 ATGCAATCGAACGGCTCTGATTCCCAACAACAGCAACAGTCCGAACAGAATCAACGGCAACCAAAAACGCAGCCAGAGACACAGACGCCACCGCAGCCACTACCACTGCCACAGCAGTGGATGCCGATGCAATACCCGTCGGCGGCTATGGTAATGCAGCATCATATGTTACCACCTCAACATTACTTGCCGCCGCCACCACAGCACTATATGCCTTATCACCAGTACCAGCACCTACCACATTTATCTCATCCGCAGCAGcatcaacatcaacatcaGGGATCAAGCGGCGAGAACAAGACAATCTGGGTCGGCGATTTACATCATTGGATGGACGAGAATTATCTCCATCGCTGTTTCGCTTCTACGGGCGagATTTCTTCCCTCAAGGTTATTCGCAATAAGCAGACAGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGCTACAGCTGAGAAAGTTTTACAGAACTATGCTGGCATTTTGATGCCTAATACAGAGCAACCATTCCGCTTAAACTGGGCAACATTTAGCACGGGTGATAAGCGTTCAGATAATGTTCCtgatctttctatttttgtagGCGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCCAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTAAGGTTTGGAGATGATAATGAGAGGTCACAAGCCATGTCTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCACGAAAATCGTCTGGCTATCAGCAGCAAGGTGGCCATGTGTCAAATGGCACATCAAACCAATCTGAAGCAGATTCAACAAACACGACAATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGTCTTTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTCGGAAAAGGATGTGGCTTTGTACAATTTGCAAATAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGAACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGATTAGAATGGATTATGGCAACCCATGGAGTGGGGCGTACTATGGAGGCCCGGTATATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGCATTTATGCTGCTGCATATGGGGCTTACCCTTTCTATGGCGGCCACCAACAGCAAGTGAGCTG 1292 0.4474 MQSNGSDSQQQQQSEQNQRQPKTQPETQTPPQPLPLPQQWMPMQYPSAAMVMQHHMLPPQHYLPPPPQHYMPYHQYQHLPHLSHPQQHQHQHQGSSGENKTIWVGDLHHWMDENYLHRCFASTGEISSLKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKSSGYQQQGGHVSNGTSNQSEADSTNTTIFVGGLDPNVTDEDLRQSFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDYGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPFYGGHQQQVS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02063 430 MobiDBLite consensus disorder prediction 1 40 - -
Bva06g02063 430 SUPERFAMILY RNA-binding domain, RBD 73 181 IPR035979 GO:0003676
Bva06g02063 430 Gene3D - 181 286 IPR012677 -
Bva06g02063 430 MobiDBLite consensus disorder prediction 1 25 - -
Bva06g02063 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Bva06g02063 430 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 429 - -
Bva06g02063 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
Bva06g02063 430 Gene3D - 99 179 IPR012677 -
Bva06g02063 430 CDD RRM2_SECp43_like 192 271 - -
Bva06g02063 430 SUPERFAMILY RNA-binding domain, RBD 192 373 IPR035979 GO:0003676
Bva06g02063 430 CDD RRM1_SECp43_like 101 181 - -
Bva06g02063 430 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 33 429 - -
Bva06g02063 430 MobiDBLite consensus disorder prediction 271 297 - -
Bva06g02063 430 CDD RRM3_NGR1_NAM8_like 299 370 - -
Bva06g02063 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Bva06g02063 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Bva06g02063 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 365 IPR000504 GO:0003723
Bva06g02063 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 169 IPR000504 GO:0003723
Bva06g02063 430 Gene3D - 287 402 IPR012677 -
Bva06g02063 430 SMART rrm1_1 194 268 IPR000504 GO:0003723
Bva06g02063 430 SMART rrm1_1 301 368 IPR000504 GO:0003723
Bva06g02063 430 SMART rrm1_1 101 176 IPR000504 GO:0003723
Bva06g02063 430 MobiDBLite consensus disorder prediction 26 40 - -
Bva06g02063 430 MobiDBLite consensus disorder prediction 273 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02063 Bva-Chr6 13745693 13749410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02063 74 380 Eukaryotic Initiation Factors Gene Family AT4G34110 26.984 1.49e-31 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00746 10 6081224 6084949 Bva06g02063 06 13745693 13749410 BWGD
Bva06g02063 06 13745693 13749410 Bva06g02063 06 13745693 13749410 ECH