Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02057 ATGGAAGCAATGAACAGGGGTTCCTCCTCCACTTCGTCCAGCTCTGACTCATCCACCTCTTCGGAGTCCAATTCCTTGACGGCAAGAAATTGCAATAAAGCCGAGAGAATCAAAGGTCCGTGGAGCGCCGAAGAAGACCGGATTCTCACCCGACTGGTCGAAAGATACGGGCCCCGGAATTGGTCGTTGATAAGCCGTTACATAAAGGGGAGGTCTGGAAAATCTTGTAGGCTTAGATGGTGTAACCAGCTGAGCCCGAGCGTGGAGCACCGCCCATTCTCGGCGGAAGAAGACGAGACCATTCTAGCGGCACATGCCCAGTACGGTAACAGGTGGGCCACCATTGCACGCTTATTACCGGGTCGAACGGACAATGCCGTCAAGAACCACTGGAACTCCACACTGAAGCGAAGGGTGAAACAAGGAGGAGCAACGAGAGAAGATCTTGGCGTCGGGGATAGTGTTAACGTTAGTGTTATTCACCAAACGGAAACGGCAAATTCTCCGGGATCTTCACAGCCCCGCATGGGAATGGGATTGGAAGATGACCCGTTGACCGCTTTGACTCTGGCACCCCCTGGACTCGCCATGCCCAACCACCCACCCGCCCAGAATATGCCGACGTTCCAGTTTTGGGATGAGATGAGAAATGTGATCGCCAAGGAAGTTAGAGAATATGTGTCTTCTGCATTTTCTGACGATTCTGCTTTTCATTG 716 0.5251 MEAMNRGSSSTSSSSDSSTSSESNSLTARNCNKAERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHRPFSAEEDETILAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVKQGGATREDLGVGDSVNVSVIHQTETANSPGSSQPRMGMGLEDDPLTALTLAPPGLAMPNHPPAQNMPTFQFWDEMRNVIAKEVREYVSSAFSDDSAFH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02057 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Bva06g02057 238 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Bva06g02057 238 Pfam Myb-like DNA-binding domain 41 99 - -
Bva06g02057 238 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Bva06g02057 238 CDD SANT 92 135 IPR001005 -
Bva06g02057 238 Gene3D - 37 89 - -
Bva06g02057 238 SMART sant 37 86 IPR001005 -
Bva06g02057 238 SMART sant 89 137 IPR001005 -
Bva06g02057 238 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 219 - -
Bva06g02057 238 MobiDBLite consensus disorder prediction 1 31 - -
Bva06g02057 238 CDD SANT 40 82 IPR001005 -
Bva06g02057 238 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Bva06g02057 238 Gene3D - 91 150 - -
Bva06g02057 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Bva06g02057 238 PANTHER MYB PROTEIN-RELATED 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02057 Bva-Chr6 13708278 13709434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02057 34 145 MYB Transcription Factor Family AT3G50060 76.786 3.02e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva06g02057 Myb_DNA-bind_6 1.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00752 10 6117173 6118061 Bva06g02057 06 13708278 13709434 BWGD
Bva06g02057 06 13708278 13709434 Bva06g02057 06 13708278 13709434 ECH