Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02042 ATGAGAGACGAAGCCGAGGCCAATAGCATCTCCCGTTCCAAATACGGCAAACCAATGCAATATTCCGATCCCAATCTCTCGTCCACCTCCGTAGGAATGCCGGATGACGATTTCTACAATCGTAATAGTAATGCCTCGGCTGCGAGTCCTGGCTATTATGACCTCGGCCGTATGAGCGGCGAAGGATCACCCATGATGATGTCTCCGTGGAATCAGACTGCCAGTACTCCCTTCGCCAAGCCACAGTGGACTCAAGACGAAAACCAACCACAGAACGGTCTCATCGGCTCTCTCGTTCGTGAAGAAGGCCATATCTATTCCTTGGCTGCCACCGGTGATCTTCTCTACACTGGTTCCGACAGCAAGAACATTCGCGTTTGGAAGAACCTCCAAGAGTACTGCGGATTCAAATCAAACAGTGGTTTAGTGAAAGCTATCATAATTTCCggtaacaaaattttcagcGGTCACCAGGACGGTAAGATTCGTGTCTGGAAAGTGTCTCCCAAGAACCCTAGCGTTCATAAGCGTTCGGGCACATTGCCAACCTTGAAAGATATATTCAAGAGTTCTATTAAGCCAAGCAATTACATCGAGGTGAGACGACGTCGTACCTCTCTCTGGATTAAGCACTCCGACGCCGTTTCCTGCTTGTGCTTGACCAGCGACAAAATGTATTTGTATTCAGCCTCCTGGGACCGAACCATAAAGATATGGAGGGTCTCTGATTCCAAGTGTCTGGAATCTATTAGTGCTCATGATGACGCCGTCAACTCCATCGTGTGCGGCTCCGACGGATTGGTCTTCACGGGATCAGCCGACGGAACCGTCAAGGTATGGAAGAGAGAGCCACGCGGAAAGGGTGTAAAGCACGCGGCGGTACAGACACTGTTAAAACAAGAGTGTGCGGTTACATCACTGGCAATGGACGCGTCGGGTTCCATAGTGTACTCTGGATCTTCTGATGGAATGGTGAATTTCTGGGAACGCGAGAAGCAGTATGCTCACGGTGGGGCGCTCAAGGGGCACAAACTAGCAGTTTTGTGCCTGCAAACAGCTGGGAATTTGGTGTTCAGTGGGTCTGCAGAAAAGACGATTTGCGTGTGGAAAAGGGAGGGGCTCATCCACACGTGCCTCTCGGTTCTAACGGGTCATGATGGTCCGGTCAAGTGCTTGGCGGTGGAGGAGGACCACGGTTCATCTTCTAACGGAGATCAACGGTGGATTGTGTATAGTGGTAGTCTCGATAAATCGGTCAAGGTGTGGAGCGTATCAGAGAATGCGTCTGATTCAGATCATACGGCTAACCGAATCGGTGGTTCTGATGCGGATGCCATACCATCTCACGAAAGCTTCTCTTCCGGCCGGGTCAGATTTTG 1379 0.5011 MRDEAEANSISRSKYGKPMQYSDPNLSSTSVGMPDDDFYNRNSNASAASPGYYDLGRMSGEGSPMMMSPWNQTASTPFAKPQWTQDENQPQNGLIGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGNKIFSGHQDGKIRVWKVSPKNPSVHKRSGTLPTLKDIFKSSIKPSNYIEVRRRRTSLWIKHSDAVSCLCLTSDKMYLYSASWDRTIKIWRVSDSKCLESISAHDDAVNSIVCGSDGLVFTGSADGTVKVWKREPRGKGVKHAAVQTLLKQECAVTSLAMDASGSIVYSGSSDGMVNFWEREKQYAHGGALKGHKLAVLCLQTAGNLVFSGSAEKTICVWKREGLIHTCLSVLTGHDGPVKCLAVEEDHGSSSNGDQRWIVYSGSLDKSVKVWSVSENASDSDHTANRIGGSDADAIPSHESFSSGRVRF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02042 459 Gene3D - 290 456 IPR015943 GO:0005515
Bva06g02042 459 MobiDBLite consensus disorder prediction 65 89 - -
Bva06g02042 459 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Bva06g02042 459 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Bva06g02042 459 PRINTS G protein beta WD-40 repeat signature 410 424 IPR020472 -
Bva06g02042 459 CDD WD40 102 423 - -
Bva06g02042 459 SMART WD40_4 375 423 IPR001680 GO:0005515
Bva06g02042 459 SMART WD40_4 243 281 IPR001680 GO:0005515
Bva06g02042 459 SMART WD40_4 129 166 IPR001680 GO:0005515
Bva06g02042 459 SMART WD40_4 290 329 IPR001680 GO:0005515
Bva06g02042 459 SMART WD40_4 91 128 IPR001680 GO:0005515
Bva06g02042 459 SMART WD40_4 333 370 IPR001680 GO:0005515
Bva06g02042 459 SMART WD40_4 202 240 IPR001680 GO:0005515
Bva06g02042 459 MobiDBLite consensus disorder prediction 430 459 - -
Bva06g02042 459 MobiDBLite consensus disorder prediction 1 38 - -
Bva06g02042 459 Gene3D - 192 289 IPR015943 GO:0005515
Bva06g02042 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 245 - -
Bva06g02042 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 281 - -
Bva06g02042 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Bva06g02042 459 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 436 IPR045182 -
Bva06g02042 459 MobiDBLite consensus disorder prediction 13 38 - -
Bva06g02042 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 281 IPR001680 GO:0005515
Bva06g02042 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 329 IPR001680 GO:0005515
Bva06g02042 459 Gene3D - 83 191 IPR015943 GO:0005515
Bva06g02042 459 PANTHER PROTEIN JINGUBANG 8 436 - -
Bva06g02042 459 MobiDBLite consensus disorder prediction 64 89 - -
Bva06g02042 459 Pfam WD domain, G-beta repeat 131 166 IPR001680 GO:0005515
Bva06g02042 459 Pfam WD domain, G-beta repeat 102 128 IPR001680 GO:0005515
Bva06g02042 459 Pfam WD domain, G-beta repeat 339 370 IPR001680 GO:0005515
Bva06g02042 459 Pfam WD domain, G-beta repeat 302 328 IPR001680 GO:0005515
Bva06g02042 459 Pfam WD domain, G-beta repeat 377 423 IPR001680 GO:0005515
Bva06g02042 459 Pfam WD domain, G-beta repeat 211 239 IPR001680 GO:0005515
Bva06g02042 459 Pfam WD domain, G-beta repeat 245 281 IPR001680 GO:0005515
Bva06g02042 459 SUPERFAMILY WD40 repeat-like 97 428 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02042 Bva-Chr6 13613771 13615612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02042 247 425 Miscellaneous Gene Families AT5G08390 28.649 1.95e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02042 06 13613771 13615612 Bva08g00665 08 3429222 3431037 ECH
Bva06g02042 06 13613771 13615612 Bva06g02042 06 13613771 13615612 ECH