LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g01958	ATGCTGAAATCAGGCATAGGAGGAATGGATCAGGAGAGGAAGCAGCTGAAGAAGCCAGCGCATGCTAGTTCCAGAAAGGGGTGTATGAGAGGGAAAGGAGGCCCTGAAAATGCCAGTTGCACCTACAAAGGTGTAAGACAGAGAACTTGGGGGAAATGGGTTGCTGAGATCCGTGAACCTAATCGTGGTGCTCGACTCTGGCTGGGGACATTTGAGACTTCCCATGAAGCTGCTCTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGATCTGAAGCCAAGCTCAATCTCCCTGAACTCTCTGTCAATGTGAATTCTCACTGTCCACCACCATCTTCTGCCATTGCTGGCCCCTGCACCCAGATTCCCCAAATGACAATCCAGAACCAGCATCAGCAGACTCTGCCTCATCAGCTTCAGCTTCAGCTACAACAAAACGTGCCACAAAGTCCAACTTGTTCTCTTGATAACACTCCAATCTCAATGGCTACTCACCAAGTTGGACCAATATATACGAGTGACTGTATCATGTCCGTTCCCTTCGAGACTAACACTACGATGCCAGCAATGGAAACCAGCTCCAAAACCACCCAAAACGAGGACATTGagcttcgtccattttgggggGCAATGAATGAGAGCCTCCCtttcttggatgattctatctGGGCAGAAGCCGCAATGTCTGTAGATTTACCTTTAATGGCCGAAGCTGGAATTTTCACTGCTGGGACTGGGAATTGCTTAGCAGAGCCAACTGCATTGGACACTCTTCACTCTCCTTGGTgcaatatgatatg	800	0.46	MLKSGIGGMDQERKQLKKPAHASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPELSVNVNSHCPPPSSAIAGPCTQIPQMTIQNQHQQTLPHQLQLQLQQNVPQSPTCSLDNTPISMATHQVGPIYTSDCIMSVPFETNTTMPAMETSSKTTQNEDIELRPFWGAMNESLPFLDDSIWAEAAMSVDLPLMAEAGIFTAGTGNCLAEPTALDTLHSPWCNMI	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g01958	266	MobiDBLite	consensus disorder prediction	1	40	-	-
	Bva06g01958	266	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE	4	244	-	-
	Bva06g01958	266	Pfam	AP2 domain	41	90	IPR001471	GO:0003700\|GO:0006355
	Bva06g01958	266	Gene3D	AP2/ERF domain	41	99	IPR036955	GO:0003700\|GO:0006355
	Bva06g01958	266	ProSiteProfiles	AP2/ERF domain profile.	41	98	IPR001471	GO:0003700\|GO:0006355
	Bva06g01958	266	SUPERFAMILY	DNA-binding domain	41	98	IPR016177	GO:0003677
	Bva06g01958	266	CDD	AP2	40	100	IPR001471	GO:0003700\|GO:0006355
	Bva06g01958	266	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	4	244	-	-
	Bva06g01958	266	SMART	rav1_2	41	104	IPR001471	GO:0003700\|GO:0006355
	Bva06g01958	266	PRINTS	Ethylene responsive element binding protein signature	42	53	IPR001471	GO:0003700\|GO:0006355
	Bva06g01958	266	PRINTS	Ethylene responsive element binding protein signature	64	80	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g01958	Bva-Chr6	13228348	13229148	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Bva06g01958		AP2	8.7e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva10g00867	10	6642450	6643220	Bva06g01958	06	13228348	13229148	BWGD
	Bva06g01958	06	13228348	13229148	Bva06g01958	06	13228348	13229148	ECH