Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01214 ATGGAGAAGGGAGAGGAGAAAGAACAAGGGGGAGACGCTGATGACAGAGcacaagaggaaaaagaagtaGACAAGGATTCTGGAGGTGAAAGGAGGAGTCAAGAGAAAGACTGTGGTGATCTGTCTCCAAATTCTTCCAGTTCAGAGGGATTGGCAGAGGGTACTGTAAACCCAAAAACACCTTCAAAAGACGAAGAAACTGCAAAATCAAAAAGTGACCAGTCAGAGAAGGAGGAAGAAAGTGATGGAAACAATTCGCAAGACAAAAGCCCCAAGAAGCCAGACAAAATACTTGCATGCCCACGTTGCAATAGCATGGACACTAAATTCTGTTACTATAACAATTACAACATTAATCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGGTACTGGACTGCCGGTGGTACCATGAGGAATGTACCAGTAGGCGCTggacgaagaaagaacaagaacTCTTCGTCTCATTATAGCCACATTTCCATTTCCGAAGCTCTTCAAGCTGCTAGAATTGATGCGCATGTCCACAACGGAAGCCATTTACCTACACTAAAAACCAATGGTAAAGTTCTCAGCTTTGGATTAGATGGACCTATTTGCGATTCTATGGCCACTGTCCTCAATCTTGCAGATGAGAAAGTTGTTAATGGTAAGAGTACCCGAAACGGGTATCATAGCtttgaggaaaaaagaattccAGTTGCTTGCAAAGGTGGGGAAAATGGGGGTGATGACTGCTCCAGTGCATCTTCCATCACAGTTTCAAATTCCATGGAAGAAAGTGGGAAAAGTACATCACAAGAATCACTACTCCGAACCAATGGTTTCTCTCCTCATATTCCATTTCTTGCTGGCGTTCCTTGGCCTTATCCCTGGAATTCTCCACTTCCATCGCCTCCTCCCACTTTGTGTCCTCCGGGGTTTGCCCCCTTCTCATTCTATCCTGCACCTTTTTGGAACTGTGGTGTGCCAGGGAATTGGAATATGAATATGCCCTGGTTTTCCCCACATTCCTCTGCTGCAAACCCAAACTCAGCTTCAAATTCTCCAACATTAGGGAAGCACTCAAGGGATGGAGAGCCACTTGAAGCAGAGTATTTGCATCACGAAGAAGAACCGCgaaaacagagaaaagggTGTGTTTTGGTTCCCAAAACATTAAGAATCGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTTGGGATTAAGAACGAATCGATGAGTGGGGGAGGCATGTTTAAGGCATTCCaaccaaagaaagaagaaaagaatcacGTCGTTGAAACTTCTCCAGTCTTGCTGGCTAACCCTGCAGCCTTGTCAAGATCCATTAATTTTCACGAAAACTCCTG 1364 0.4179 MEKGEEKEQGGDADDRAQEEKEVDKDSGGERRSQEKDCGDLSPNSSSSEGLAEGTVNPKTPSKDEETAKSKSDQSEKEEESDGNNSQDKSPKKPDKILACPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYSHISISEALQAARIDAHVHNGSHLPTLKTNGKVLSFGLDGPICDSMATVLNLADEKVVNGKSTRNGYHSFEEKRIPVACKGGENGGDDCSSASSITVSNSMEESGKSTSQESLLRTNGFSPHIPFLAGVPWPYPWNSPLPSPPPTLCPPGFAPFSFYPAPFWNCGVPGNWNMNMPWFSPHSSAANPNSASNSPTLGKHSRDGEPLEAEYLHHEEEPRKQRKGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESMSGGGMFKAFQPKKEEKNHVVETSPVLLANPAALSRSINFHENS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01214 454 MobiDBLite consensus disorder prediction 39 55 - -
Bva06g01214 454 MobiDBLite consensus disorder prediction 1 38 - -
Bva06g01214 454 MobiDBLite consensus disorder prediction 338 359 - -
Bva06g01214 454 MobiDBLite consensus disorder prediction 238 271 - -
Bva06g01214 454 MobiDBLite consensus disorder prediction 338 354 - -
Bva06g01214 454 MobiDBLite consensus disorder prediction 244 271 - -
Bva06g01214 454 ProSitePatterns Zinc finger Dof-type signature. 100 136 IPR003851 GO:0003677|GO:0006355
Bva06g01214 454 ProSiteProfiles Zinc finger Dof-type profile. 98 152 IPR003851 GO:0003677|GO:0006355
Bva06g01214 454 MobiDBLite consensus disorder prediction 59 96 - -
Bva06g01214 454 Pfam Dof domain, zinc finger 96 152 IPR003851 GO:0003677|GO:0006355
Bva06g01214 454 PANTHER CYCLIC DOF FACTOR 2 33 453 IPR045174 GO:0003700|GO:0006355
Bva06g01214 454 MobiDBLite consensus disorder prediction 1 98 - -
Bva06g01214 454 PANTHER CYCLIC DOF FACTOR 1 33 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01214 Bva-Chr6 9425941 9428870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01214 19 452 C2C2-Dof Transcription Factor Family AT3G47500 48.444 7.08e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva06g01214 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01214 - - qsu:111998711 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01214 06 9425941 9428870 Bva05g00489 05 2393992 2396820 ECH
Bva04g00288 04 1751664 1755116 Bva06g01214 06 9425941 9428870 ECH
Bva08g01506 08 7922520 7926223 Bva06g01214 06 9425941 9428870 ECH
Bva11g00975 11 11629494 11632861 Bva06g01214 06 9425941 9428870 ECH
Bva06g01214 06 9425941 9428870 Bva06g01214 06 9425941 9428870 ECH