Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01123 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATCAACAGACAGGTGACGTTCTCCAAGAGAAGGTCCGGTTTGCTCAAGAAAGCACATGAGATCTCTGTTCTCTGCGATGCCGAGGTTGCTATGATTGTCTTCTCCACCAAGGGCAAGCTTTTCGAGTACTCCAGCGATCCCTGTATGGAAAGAATTCTTGAACGGTACGAAAGGTATTCCTATGCAGAGAGGCAGCTGGCTGCAAATGATCAACAATCAAACGGCGACTGGACTCTGGAACATGCGAAGCTAAAGGCCAGGGTGGCGGTTTTACAAAAGAATCTAAGGCATTTTAAGGGAGAAGACCTAGATGGCCTAAGTTCCAAAGAACTTCAGAATTTGGAGCAACAACTTGACTCGGCTCTCAAACAAATTAGAACAAGGAAGAACCAACTCATGCATGAATCTATCTCAGACCTTCAGAAAAAGGATAGGGCACTCCAGGAACAAAACAATTTGCTTGCAAAGAaggtaaaggagaaagagaagacaTTGGCTCAGCAAGCACAGTGGGAAcagcaaaatcaaaatcatgaaGTGGATAATACCTGTGTCCTTCTACCACAACCTTCGCAGCCCTTGAATATTGGATCATCAAGTTCTAACCAGGGAAGAATTGATGGAGGAGATTATGAAGGAAATCCAACTCAACCTCGAGCTAATACTCTTCTTCCCCCATGGATGCTTAGCCctta 737 0.4274 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAMIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLAANDQQSNGDWTLEHAKLKARVAVLQKNLRHFKGEDLDGLSSKELQNLEQQLDSALKQIRTRKNQLMHESISDLQKKDRALQEQNNLLAKKVKEKEKTLAQQAQWEQQNQNHEVDNTCVLLPQPSQPLNIGSSSSNQGRIDGGDYEGNPTQPRANTLLPPWMLSP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01123 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 MobiDBLite consensus disorder prediction 205 221 - -
Bva06g01123 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 Coils Coil 151 174 - -
Bva06g01123 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bva06g01123 245 MobiDBLite consensus disorder prediction 205 245 - -
Bva06g01123 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01123 245 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva06g01123 245 Coils Coil 95 115 - -
Bva06g01123 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Bva06g01123 245 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bva06g01123 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bva06g01123 245 Coils Coil 125 145 - -
Bva06g01123 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva06g01123 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01123 Bva-Chr6 8933747 8938236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01123 1 208 MADS-box Gene Family AT1G26310 62.559 6.84e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva06g01123 K-box 8.5e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01123 06 8933747 8938236 Bva05g00579 05 2883445 2887772 ECH
Bva03g01968 03 17681934 17686766 Bva06g01123 06 8933747 8938236 ECH
Bva04g00397 04 2354037 2360363 Bva06g01123 06 8933747 8938236 ECH
Bva06g01123 06 8933747 8938236 Bva06g01123 06 8933747 8938236 ECH