Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00489 ATGCAGGAAAGTAAAGACCCTGCAATCAAGCTGTTCGGCCAAAAGATTCCCTTGCCCGGTGACGGCGAGCCTCCCACCATTGCCGGCCACGACCCGTCCTCGCCGCCGGTGATTGATACGCTGAaggaagaggagaaagaaCAAGGAGGAGACGATGATGACGGGGCACAAGAGGAAAACGCAGAAGCAGACGAGGATTGTGGAGATGGAAACGTTAGTGAGAGGGCTCAAGAGAAAGACGGCGATCTGTCTCCTTATTCCAGTTCAGAGAGATTGGCAGAGGGTACTGTAAACCCAAAAACACCttcaaaagatgaagaaaccGCAAAATCAACGAGCGACAGGTCAGAGAAGGAGGAAAGTGATGGAAACAAGTGGCAAGAGAAGAGCCCGAAGAAGCCAGATAAAATACTTGCATGTCCACGCTGCAATAGCATGGACACTAAATTCTGTTACTATAACAACTACAACGTTAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGGTACTGGACCGCTGGAGGTACCATGAGGAATGTACCAGTGGGAGCAggacgaagaaagaacaagaacTCTTCCTCTCATTATCGCCATATTTCCATTTCTGAGGCTCTTCAAGCTGCTAGAATTGATGTATATGCACCCAATGGAACCCCATTAAAAACCAATGGTAAAGTCCTCAGCTTTGGATTAGATGCACCTATTTGCGATTCCATGGCATCTCTCCTCAATCTTGCAGATGAAAAAGTTATCAAAGGTACGAGTACCCGAAACGGGTTTCATGAACAAAGAATTCCAGTTACTTGCAAAGGTGGGGAAAATGGTGATGACTGCTCTAGTGCATCTTCCATCACGGTTTCAAATTCCATGGAAGAAAGTGGGAAGAGTACATCCCAAGAATCACTACACAGAACCAATGGTTTCCATCCTCAAATTCCATGTCTTGCTGGTGTTCCTTGGCCTTATCCCTGGAATTCTCCTCTTCCCTCACCTCCTGCTTTGTGTCCTCCGGGGTTTCCCCCCCTCTCATTCTACCCTGCAGCTTTTTGGAACTGTGGTGTGCCAGTGCCAGGGAATtggaatatgaatatgaatatgcaCTGGTTTTCCCCACATTCCCCTGCTCATAGCCCAGACTCTGATTCAAAATCTCCAACATTAGGGAAGCACTCAAGGGATGGGGAGCTGCTTAAACCAGAGCATTCGCTTCACAGAGAAGAACCACCAAAACAGAGAAATGGGTGTGTTTTGGTTCCCAAAACATTAAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTTGGAATTAAGAATGAATCGGCGAGTGGGGGAAGCAAGTTTAAGGCATTccaagcaaagaaagaccaaaagaatCATGATATTGAAACATCTCCAGTCTTGCGGGCTAACCCTGCAGCCTTGTCTAGATCCCTTAATTTTCATGAAAACTCCTG 1472 0.4382 MQESKDPAIKLFGQKIPLPGDGEPPTIAGHDPSSPPVIDTLKEEEKEQGGDDDDGAQEENAEADEDCGDGNVSERAQEKDGDLSPYSSSERLAEGTVNPKTPSKDEETAKSTSDRSEKEESDGNKWQEKSPKKPDKILACPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHISISEALQAARIDVYAPNGTPLKTNGKVLSFGLDAPICDSMASLLNLADEKVIKGTSTRNGFHEQRIPVTCKGGENGDDCSSASSITVSNSMEESGKSTSQESLHRTNGFHPQIPCLAGVPWPYPWNSPLPSPPALCPPGFPPLSFYPAAFWNCGVPVPGNWNMNMNMHWFSPHSPAHSPDSDSKSPTLGKHSRDGELLKPEHSLHREEPPKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGSKFKAFQAKKDQKNHDIETSPVLRANPAALSRSLNFHENS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00489 490 MobiDBLite consensus disorder prediction 276 306 - -
Bva05g00489 490 MobiDBLite consensus disorder prediction 100 133 - -
Bva05g00489 490 PANTHER CYCLIC DOF FACTOR 1 1 489 - -
Bva05g00489 490 MobiDBLite consensus disorder prediction 1 133 - -
Bva05g00489 490 MobiDBLite consensus disorder prediction 446 475 - -
Bva05g00489 490 Pfam Dof domain, zinc finger 136 192 IPR003851 GO:0003677|GO:0006355
Bva05g00489 490 MobiDBLite consensus disorder prediction 46 67 - -
Bva05g00489 490 MobiDBLite consensus disorder prediction 272 306 - -
Bva05g00489 490 MobiDBLite consensus disorder prediction 68 85 - -
Bva05g00489 490 PANTHER CYCLIC DOF FACTOR 2 1 489 IPR045174 GO:0003700|GO:0006355
Bva05g00489 490 MobiDBLite consensus disorder prediction 373 395 - -
Bva05g00489 490 ProSitePatterns Zinc finger Dof-type signature. 140 176 IPR003851 GO:0003677|GO:0006355
Bva05g00489 490 ProSiteProfiles Zinc finger Dof-type profile. 138 192 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00489 Bva-Chr5 2393992 2396820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00489 1 488 C2C2-Dof Transcription Factor Family AT3G47500 45.941 2.41e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva05g00489 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00489 - - cit:102629672 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01214 06 9425941 9428870 Bva05g00489 05 2393992 2396820 ECH
Bva04g00288 04 1751664 1755116 Bva05g00489 05 2393992 2396820 ECH
Bva08g01506 08 7922520 7926223 Bva05g00489 05 2393992 2396820 ECH
Bva11g00975 11 11629494 11632861 Bva05g00489 05 2393992 2396820 ECH
Bva05g00489 05 2393992 2396820 Bva05g00489 05 2393992 2396820 ECH