Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02018 ATGAACTGTGGTGTAGACATGTCTCAGAAGGATCCCACCATCAAGCTCTTTGGCAGGAAGATTCCTTTGCCGGAATGCCAGATTCCGGCTACCTCTCCGgaTGCTTGCAGTGGCTTGAAGAACACAGAAGTAGAAAAGTCTTGTGCAGAAAACTGTGAGCAACAAGGGGATTCCTCAGACGTAGGAGATGGTAAAAAAGGATCCAATCACACTGAGCTAAATGTAAATCCCACGGTTGTCGAAGATAAGATAGATAGCAGTGTTACAGATCAAGATAAAGTCTTCAAGAAACCAGACAGGATTCTTCAGTGTCCACGATGTAACAGTTTGGAGACAaagttttgttatttcaatAACTACAATGTGAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACAGCTGGTGGAACAATGAGAAATGTTCCTGTGGGCGCTGGGAGACGCAAGAACAAACACCTAGCTTCTCAATATCGCCACGTTATAGTAGCCTCTGAAGGAATTTCAAGTACCAGGTTAGATAACACAGACGAGTCTGGTCACCAGCTTGTGTCATGTCTAGAATCCTCAGCTGCTCTTAGGACTTCAACAGATAATGGTACTGCATTGAAGTTTGGTCCAGATGCCCCTCTCTGTGAATCCATGGAGTCAATGCTTAATCTTAGAGACCAGAAAAGAAGTACTGATGCTAGTTCTATGAATTGTGCAGAAAATGGGGACGAGTTGTCACTGTGTGCATCTTCAGTGACAAGTGCTAGTACTCAGGGAAATGAGTCATCAGAATTTATGGTGCAAAGGGAGCGAGGTATTTCTTCTAATGACCCTAACACATCCCATCGGTTGCAATGTCACCCTGTTCCTCCATGGGTCGTCCCTTTGAATCCTGTTTGGAACAATGTTGCTTCCATGGCTGGAGCTCATCAGCCGCCGGAGCGAATGGCTAATCCATATAACACTGATCAGACTCCAATGCAGTGGTATCCCACACCTGTAGTAACAGTCCCAGGCATTTGCCCACCAAGCATGCCTTTACAATTTGTACCAGCACCATACTGGGGTGGCATACCTGTATGGGCTGCTGGAACAGGCACATTGTCTTTAGGATCCAATGCCTGTCTCTCTCCCTCGTCTTCTACAAGTAATAGCTGCTGCTCAGGCAATGGTTCTCCAACCTTGGGCAAGCACCCTAGAGATACAGTCTTCACAGACGGAGAGAAATCTGACAAGTGTGTTTTGGTTCCAAAGACACTTAGAATCGATGACCCAAATGAGGCTTCAAGAAGTCCAATATGGGCTACATTAGGCATTAAGCCTGACAAAGGAGACAGCAAGGACTGCATGAATGGTGTTTCTCAGATCTTGGAAGCTAACCCTGCTGCCATTTCTCGTGCTCACTCATTCCTGGAGAGCACATA 1424 0.4558 MNCGVDMSQKDPTIKLFGRKIPLPECQIPATSPDACSGLKNTEVEKSCAENCEQQGDSSDVGDGKKGSNHTELNVNPTVVEDKIDSSVTDQDKVFKKPDRILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHVIVASEGISSTRLDNTDESGHQLVSCLESSAALRTSTDNGTALKFGPDAPLCESMESMLNLRDQKRSTDASSMNCAENGDELSLCASSVTSASTQGNESSEFMVQRERGISSNDPNTSHRLQCHPVPPWVVPLNPVWNNVASMAGAHQPPERMANPYNTDQTPMQWYPTPVVTVPGICPPSMPLQFVPAPYWGGIPVWAAGTGTLSLGSNACLSPSSSTSNSCCSGNGSPTLGKHPRDTVFTDGEKSDKCVLVPKTLRIDDPNEASRSPIWATLGIKPDKGDSKDCMNGVSQILEANPAAISRAHSFLEST 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02018 474 Pfam Dof domain, zinc finger 100 156 IPR003851 GO:0003677|GO:0006355
Bva04g02018 474 PANTHER CYCLIC DOF FACTOR 3-LIKE 7 473 - -
Bva04g02018 474 MobiDBLite consensus disorder prediction 53 76 - -
Bva04g02018 474 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Bva04g02018 474 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Bva04g02018 474 PANTHER CYCLIC DOF FACTOR 2 7 473 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02018 Bva-Chr4 20021730 20024806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02018 7 472 C2C2-Dof Transcription Factor Family AT3G47500 35.771 3.43e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva04g02018 zf-Dof 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02018 - - ccaj:109792807 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02018 04 20021730 20024806 Bva04g02018 04 20021730 20024806 ECH