Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00866 ATGAGAAAGCCCTGCTGCTGCGAGAAGGAAGAAACTAATAAAGGACCTTGGTCCAAGCAAGAAGACCAGAAACTCATGGACTACATAAAAGAACACGGGGAAGGCTGCTGGCGTTGGATTCCCCGTGCTGCTGGGTTGCGTCGTTGTGGCAAAAGCTGCCGGTTGAGGTGGTTAAACTATCTGAAACCTGAAGTTAAACATGGAGACTTTGGAGAAGATGAAGAGGACTTGATCATCAGGCTTCATGCTCTTCTTGGCAACAGGGgaaaacttgatttttttttcccttctaaaCTTTCTAATCCTAGACTATTCCTCATAGCATTCACATGGATATGTCATGTTTGTGTGTGGGCGCTAATAGCAGGAAGATTGCCAGGACGGTCAGACAATGAAATCAAGCATTACTGGAATTCCCACATCAAGAAAAAGTTGGAACGCATGGGACATGATCCCAATAATCTTCATGGCTTTAAAAGTTCTGTCCTTGCTATCAGTAAGCCATTTGGGCTCAAAACTAACGAGGTTCCCAAGCATGTAAGCTTCAATGCTGTTGACAGTCAGGTCTTGAATTCGTCAACTGGTCCTGATCAGTGCAATATCAGCAATTTTCCTGACTTGAATCTTGATCTCACACTCAGCACTTCCTCCATGGAAAGGGAAACAGAAGCACCTAAAGATTG 683 0.4305 MRKPCCCEKEETNKGPWSKQEDQKLMDYIKEHGEGCWRWIPRAAGLRRCGKSCRLRWLNYLKPEVKHGDFGEDEEDLIIRLHALLGNRGKLDFFFPSKLSNPRLFLIAFTWICHVCVWALIAGRLPGRSDNEIKHYWNSHIKKKLERMGHDPNNLHGFKSSVLAISKPFGLKTNEVPKHVSFNAVDSQVLNSSTGPDQCNISNFPDLNLDLTLSTSSMERETEAPKD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00866 227 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Bva04g00866 227 CDD SANT 16 61 IPR001005 -
Bva04g00866 227 Pfam Myb-like DNA-binding domain 68 140 IPR001005 -
Bva04g00866 227 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva04g00866 227 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva04g00866 227 Gene3D - 14 66 - -
Bva04g00866 227 ProSiteProfiles Myb-like domain profile. 62 141 IPR001005 -
Bva04g00866 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva04g00866 227 PANTHER MYB-RELATED PROTEIN 308-LIKE 118 222 - -
Bva04g00866 227 PANTHER MYB-RELATED PROTEIN 308-LIKE 2 90 - -
Bva04g00866 227 SMART sant 66 143 IPR001005 -
Bva04g00866 227 SMART sant 13 63 IPR001005 -
Bva04g00866 227 CDD SANT 72 141 IPR001005 -
Bva04g00866 227 Gene3D - 69 145 - -
Bva04g00866 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 118 222 - -
Bva04g00866 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 90 - -
Bva04g00866 227 SUPERFAMILY Homeodomain-like 111 150 IPR009057 -
Bva04g00866 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 145 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00866 Bva-Chr4 5677608 5678842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00866 1 214 MYB Transcription Factor Family AT4G38620 42.735 2.43e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g00866 Myb_DNA-binding 3.4e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01299 13 6653530 6655003 Bva04g00866 04 5677608 5678842 ECH
Bva01g01612 01 17428476 17430253 Bva04g00866 04 5677608 5678842 ECH
Bva11g00648 11 9768340 9770302 Bva04g00866 04 5677608 5678842 ECH
Bva04g00866 04 5677608 5678842 Bva04g00866 04 5677608 5678842 ECH