Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00819 ATGGCTCAATTCACAGCAGATTTGCAAAGCTTTAGACCATCATTTCCTTTCCTGGACATTGATCCAAACATGGAAATTATAAACCAGCTCACAGGGATGACTTCAAATGTACTTGACAACTCAAATCTGTATTTGCAGAGCTTGATCCCATTCAATGATGGCTTCTGGGTCCCCCCAGAATCTGAATTCAGGGAAAACTTGGAAGGAATTAATTTCTCAGGTATTGTCCATCATGTCAACCACAATGCATTGCCAGTTTCCCTTCCTGTTGTTCcatcagaaaatgaaatccaggaaatcaagaaaaggaaaacaatggATTTGCCCGAGACCAGTTCTGCAAACTCAACTCCACAAGTTTCTGAATCAGCAGGAAGCAAGATCAAAAGtAATTGTGGAAGAGGTAAAAGAGCAAAGAGCAATGttacagaagaagagaaaccAAAGGAAGTGGTTCATGTAAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAaaggGTTAGAAGAGggaaaatcaatgaaaaattaaagtgcTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGAATGGCAGTAATGTTAGATGAGATCATAAACTATGTCCAATCCTTACAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTACTGCAGCAAGTTCCTACTATGACTTCAATTCAGAGACAGATACCTTAGAAACAATGCAGAGAAGAAGGGCATCCGAGGCAAAAGAATTGGGCAAATATGTGAGAGAAGGGTATGGAGAGGTTACCTGTTATCAACCAAGCTGGGCCCTTTG 815 0.373 MAQFTADLQSFRPSFPFLDIDPNMEIINQLTGMTSNVLDNSNLYLQSLIPFNDGFWVPPESEFRENLEGINFSGIVHHVNHNALPVSLPVVPSENEIQEIKKRKTMDLPETSSANSTPQVSESAGSKIKSNCGRGKRAKSNVTEEEKPKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSMKLTAASSYYDFNSETDTLETMQRRRASEAKELGKYVREGYGEVTCYQPSWAL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00819 271 MobiDBLite consensus disorder prediction 109 128 - -
Bva04g00819 271 SMART finulus 166 216 IPR011598 GO:0046983
Bva04g00819 271 MobiDBLite consensus disorder prediction 138 166 - -
Bva04g00819 271 PANTHER TRANSCRIPTION FACTOR BEE 1 2 269 - -
Bva04g00819 271 Gene3D - 160 223 IPR036638 GO:0046983
Bva04g00819 271 CDD bHLH_AtBPE_like 150 235 - -
Bva04g00819 271 MobiDBLite consensus disorder prediction 102 166 - -
Bva04g00819 271 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 269 IPR024097 GO:0006355
Bva04g00819 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Bva04g00819 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 228 IPR036638 GO:0046983
Bva04g00819 271 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00819 Bva-Chr4 5414756 5416377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00819 99 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 62.842 9.02e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g00819 HLH 6.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01826 03 16466369 16470350 Bva04g00819 04 5414756 5416377 ECH
Bva01g01722 01 18197244 18198750 Bva04g00819 04 5414756 5416377 ECH
Bva11g00746 11 10359823 10361569 Bva04g00819 04 5414756 5416377 ECH
Bva04g00819 04 5414756 5416377 Bva04g00819 04 5414756 5416377 ECH