Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00397 ATGGGGAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAATCAGCCGGCAAGTGACATTTTCCAAGCGAAGAGTGGGATTGCAGAAGAAAGCTCATGAAATCTCAGTGCTTTGTGATGCTCAGGTGGCTCTGATTGTGTTCTCCACAAAAGGGAAACTCTATGAGTTCAGCTCTGAAAACAGTGTGGATGTCATCCTGGATAAATACGAGAGACAGTCGCACATTGAACAACTTGCCACAGATAACATTGAATCACAGGGAAGCATGTCCTTCGAATTCTCCAAGCTCACAACTAGAATTCAAGTCTTGCAGAAGAACATCAGGAACATGGAGGGAGATGATCTGGATCGCTTGAGCTTTAGAGAGCTGATGAATTTGGAGCAGCAGCTCGATAATGCTCTCAAGCGTGTACGAACAAGAAAGAACCAACTTATGAATGAATCTGTCTCGGAGCTCCACAAAAAGGCAAAGGCATTGCAGGATCAAAACTTGTTGCTAGAAAAGAAGGCgaaggagaaagagaggaTAACAACTGAACGTCTACAATGGGGGCAAGAAACCCTAGGCCAAAATTCATCCGCTTTCAACTTACCTCCACCAATGCTACAAACACCACAAATGCTAGTTCCTTCTCTAACACTCGGGGGGACTTTCCATGCAAGAAGGTCTCCGGATGAAGTTGATGCAGTTCAGACTGGTCCATGCAGCACCAGTCTCGTGCCATCTTGGATGCTGCCCCATTTGGCTCGATA 755 0.4517 MGRGRVQLKRIENKISRQVTFSKRRVGLQKKAHEISVLCDAQVALIVFSTKGKLYEFSSENSVDVILDKYERQSHIEQLATDNIESQGSMSFEFSKLTTRIQVLQKNIRNMEGDDLDRLSFRELMNLEQQLDNALKRVRTRKNQLMNESVSELHKKAKALQDQNLLLEKKAKEKERITTERLQWGQETLGQNSSAFNLPPPMLQTPQMLVPSLTLGGTFHARRSPDEVDAVQTGPCSTSLVPSWMLPHLAR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00397 251 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Bva04g00397 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva04g00397 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva04g00397 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva04g00397 251 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 225 - -
Bva04g00397 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva04g00397 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva04g00397 251 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g00397 251 Coils Coil 124 177 - -
Bva04g00397 251 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g00397 251 PANTHER MADS BOX PROTEIN 1 225 - -
Bva04g00397 251 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bva04g00397 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva04g00397 251 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bva04g00397 251 Coils Coil 94 114 - -
Bva04g00397 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00397 Bva-Chr4 2354037 2360363 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva04g00397 K-box 1.2e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01968 03 17681934 17686766 Bva04g00397 04 2354037 2360363 BWGD
Bva04g00397 04 2354037 2360363 Bva06g01123 06 8933747 8938236 ECH
Bva04g00397 04 2354037 2360363 Bva05g00579 05 2883445 2887772 ECH
Bva04g00397 04 2354037 2360363 Bva04g00397 04 2354037 2360363 ECH
Bva03g01968 03 17681934 17686766 Bva04g00397 04 2354037 2360363 ECH
Bva01g01902 01 19327945 19332635 Bva04g00397 04 2354037 2360363 ECH
Bva11g00891 11 11192434 11197020 Bva04g00397 04 2354037 2360363 ECH