Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00326 ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCTACAATGGCCGTGATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCAGTATCCCGCATTGCAGCCTGGAATAGTGATCAGCTTCCTATCTATGAGCCAGGCCTTGATGGAGTGGTGAAGCAATGCCGAGGCAAGAACCTTTTCTTCAGCACTGATGTGGAAAAGCATGTCTGCGAGGCTGACATAGTTTTTGTTTCTGTCAATACACCAACTAAGACTCGTGGTCTTGGAGCTGGCAAGGCTGCAGATCTGACATATTGGGAGAGTGCAGCTCGCATGATTGCCGATGTCTCAAAATCTGACAAAATTGTGGTTGAGAAATCTACTGTCCCAGTCAAAACCGCCGAGGCCATAGAGAAAATTCTGACTCACAATAGCAAGGGGATTAAATTCCAGATCCTGTCAAACCCAGAATTCCTTGCTGAGGGAACTGCAATCCAAGATCTTTTTGAGCCAGACAGGGTTCTCATTGGAGGCAGGGATACCCCCGAAGGCCAAAAAGCCATTCAAGCATTGAAGGATGTTTATGCTCAATGGGTCCCTGAGGACAGAATCCTAACCACAAATCTCTGGTCTGCAGAGCTGTCTAAGCTTGCTGCCAACGCCTTCTTGGCTCAAAGGATATCATCTGTTAATGCCATGTCAGCACTTTGCGAGGCTACTGGGGCCAACATTCAACAAGTGTCATATGCTGTTGGTAAGGACTCAAGAATTGGACCCAAGTTCCTGAATGCTAGTGTTGGCTTTGGCGGATCCTGCTTCCAGAAAGATATCTTGAACCTTGTTTACATCTGTGAGTGCAATGGCCTTCCAGATGTGGCAGAGTACTGGAAACAAGTTATCAAGATCAACGACTATCAGAAGAGTCGTTTTGTGAACCGGGTTGTTGCCTCAATGTTTAACACAGTTGCAAACAAGAAGATTGCTATTCTGGGATTTGCCTTCAAGAAAGATACCGGCGACACAAGGGAGACTCCAGCCATTGACGTGTGCAAGGGGCTACTCGGAGACAAAGCCCGCCTGAGCATATATGACCCACAGGTGACTGAGGATCAAATCCAGAGGGATCTCACAATGAACAAATTTGATTGGGACCACCCTATTCACCTACAGCCCATGAGTCCTAGCACCGTGAAGCAAGTCCGTGTAAGTTGGGATGCCTATGAATCAACGAAGGATGCTCATTGTCTCTGCATCCTCACTGAGTGGGATGAGTTCAAGACTCTTGATTACCAGAGGATATATGACAACATGCAAAAGCCAGCATTCGTTTTCGATGGCAGAAACATTGTGGACGTTGACAAGCTACGCGAAATTGGCTTCATCGTGTACTCAATTGGTAAGCCTCTTGATCCATGGCTGAAGGACATGCCTGCTGTGGCTTG 1442 0.4723 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVCEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFEPDRVLIGGRDTPEGQKAIQALKDVYAQWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANIQQVSYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPDVAEYWKQVIKINDYQKSRFVNRVVASMFNTVANKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPIHLQPMSPSTVKQVRVSWDAYESTKDAHCLCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNIVDVDKLREIGFIVYSIGKPLDPWLKDMPAVA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00326 480 Gene3D - 209 240 - -
Bva04g00326 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Bva04g00326 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Bva04g00326 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Bva04g00326 480 Gene3D - 241 477 - -
Bva04g00326 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Bva04g00326 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Bva04g00326 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Bva04g00326 480 Gene3D - 1 208 - -
Bva04g00326 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 314 463 IPR036220 -
Bva04g00326 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Bva04g00326 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 480 - -
Bva04g00326 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Bva04g00326 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Bva04g00326 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00326 Bva-Chr4 1954902 1957760 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02076 03 18366889 18369582 Bva04g00326 04 1954902 1957760 BWGD
Bva04g00326 04 1954902 1957760 Bva06g01164 06 9185892 9188117 ECH
Bva04g00326 04 1954902 1957760 Bva05g00412 05 2034011 2037988 ECH
Bva04g00326 04 1954902 1957760 Bva04g00326 04 1954902 1957760 ECH
Bva03g02076 03 18366889 18369582 Bva04g00326 04 1954902 1957760 ECH
Bva08g01572 08 8262068 8264682 Bva04g00326 04 1954902 1957760 ECH
Bva11g00921 11 11357609 11360202 Bva04g00326 04 1954902 1957760 ECH