Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00288 ATGTCGGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGCTGCCGGAGGCCCCGGATAGACCCGGAGACTCCAACGGAGCTCCACCTTCATCTTCTGGGGATACTGTTGATGATAATATTGATCAGAATCATCCTTCGTCCGCTAACTCTTCGAGGGAGTCCAATACGAACAGGGATGGTGAAGAGCAGGAAGCTGATAAGGATACATTGGGAGAAAAACCAGTTCAGGATAAGAAGGAAGAAGGAGCCACCGCCCAATCTTCAGAAGTGTTAAGCAATCCAGATGCAGCCTCAAGAACTGGTGAAGAATCTATTACACCCTCTGTTGAAAAGGAGGCtacaattttgaaaacttcAAAGACTGAAGAACCGAGTGAGACAAGCAATTCACAAGAAAAGGCCTTGAAGAAGCCAGATAAAATACTTCCTTGCCCCCGCTGTAATAGCATGGACACCAAATTCTGCTACTACAATAATTACAATGTCAACCAACCACGGCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGTGGGACCATGAGGAATGTTCCCGTAGGTGCTGGCCGCAGGAAGAACAAGAACTCAGCTTCTCAATACCGTCATATAACTGTCTCTGAAGCTCTTCACAATGTCAGAACAGACTTGCCAAATGGAATCCATCATCCTTCCTTGAAATCCAATGGCACAGTTCTTACATTTGGATCTGATACACCCCTCTGTGAATCAATGGCATCTGTTTTACATCTTGCTGATAAAACAATGCAAAACTGCACTAGAAATGGATTTCATAAACCCGAAGAACTAAGAATTCCAGTTTCTAATAGTGGcggagaaaaaggaaatgatcATTCCAATAAATCCCCTGTCACCTCAGCAAAATCAACAGAAGATGCAAGCACTAACAGGTCACAAGAACAAATGTTGCAGAATTGTCAGGGCTTTCCACCTCAATTTCCCTACTTTCCTGGGCCCCCTTGGCCTTTCCCATGGAATCCAGCTCAATGGAGCTCTCCAGTACCACCGCCTGCTTTCTGTCCTCCGGGATTTACTATGCCATTCTATCCTGCAACAGCTTATTGGGGTTGTACTGTATCAGGTGCTTGGAACATCCCATGGGTAGCCCAACCATCATCACCAAACAGCACAGCCCCTAATTCAGGTCCTAACTCACCAACCTTGGGTAAGCattcaagagaagaaaacttgCTCAAATCAAACGACTCTGGTGCAGAAGATGAACatggcaaagaaaataataaggaAAAATCCCTTTGGGTTCCAAAAACATTAAGGATTGATGACCCGGGAGAGGCAGCAAAAAGTTCCATATGGACAACACTGGGgattaaaaatgagaaggcTGACACAGCTCACGGGGGAGGACTCTTTAAAGCCTTCCCATCAAAGGGTGATGAAAAGAATCAACCAACGGAAACATCATCGGTCTTGCAAGCCAATCCAGCAGCATTGTCTAGGTCATTTAACTTTCGCGAGTCCTCGTA 1520 0.4362 MSEAKDPAIKLFGKTIPLPEAPDRPGDSNGAPPSSSGDTVDDNIDQNHPSSANSSRESNTNRDGEEQEADKDTLGEKPVQDKKEEGATAQSSEVLSNPDAASRTGEESITPSVEKEATILKTSKTEEPSETSNSQEKALKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASQYRHITVSEALHNVRTDLPNGIHHPSLKSNGTVLTFGSDTPLCESMASVLHLADKTMQNCTRNGFHKPEELRIPVSNSGGEKGNDHSNKSPVTSAKSTEDASTNRSQEQMLQNCQGFPPQFPYFPGPPWPFPWNPAQWSSPVPPPAFCPPGFTMPFYPATAYWGCTVSGAWNIPWVAQPSSPNSTAPNSGPNSPTLGKHSREENLLKSNDSGAEDEHGKENNKEKSLWVPKTLRIDDPGEAAKSSIWTTLGIKNEKADTAHGGGLFKAFPSKGDEKNQPTETSSVLQANPAALSRSFNFRESS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00288 506 MobiDBLite consensus disorder prediction 89 108 - -
Bva04g00288 506 MobiDBLite consensus disorder prediction 29 58 - -
Bva04g00288 506 MobiDBLite consensus disorder prediction 478 506 - -
Bva04g00288 506 MobiDBLite consensus disorder prediction 383 402 - -
Bva04g00288 506 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Bva04g00288 506 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Bva04g00288 506 MobiDBLite consensus disorder prediction 283 319 - -
Bva04g00288 506 MobiDBLite consensus disorder prediction 1 141 - -
Bva04g00288 506 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Bva04g00288 506 MobiDBLite consensus disorder prediction 59 88 - -
Bva04g00288 506 PANTHER CYCLIC DOF FACTOR 2 1 505 IPR045174 GO:0003700|GO:0006355
Bva04g00288 506 MobiDBLite consensus disorder prediction 411 434 - -
Bva04g00288 506 MobiDBLite consensus disorder prediction 460 506 - -
Bva04g00288 506 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 505 - -
Bva04g00288 506 MobiDBLite consensus disorder prediction 266 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00288 Bva-Chr4 1751664 1755116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00288 6 506 C2C2-Dof Transcription Factor Family AT5G39660 46.374 7.97e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva04g00288 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00288 - - aprc:113862693 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00288 04 1751664 1755116 Bva06g01214 06 9425941 9428870 ECH
Bva04g00288 04 1751664 1755116 Bva05g00489 05 2393992 2396820 ECH
Bva04g00288 04 1751664 1755116 Bva04g00288 04 1751664 1755116 ECH
Bva08g01506 08 7922520 7926223 Bva04g00288 04 1751664 1755116 ECH
Bva11g00975 11 11629494 11632861 Bva04g00288 04 1751664 1755116 ECH