Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01968 ATGGGGAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAAGTAACGTTTTCAAAGAGAAGAACGGGATTGCTTAAGAAGGCTCATGAAATCTCGGTGCTGTGTGATGCTCAGGTGGCTCTGATCGTCTTCTCCACAAAAGGGAAACACTATGAGTACAGCTCTGAGAACAGTATGGATGCCATCCTGGAAAAATACGAAAGACAGTCACACTATGAACAACTTGCCACTGATAACACTGAATCGCAGGGAAACATATCCTTGGAATTCTCCAAGCTCAGTACTAGAATTCAAGTCTTGCAGAAGAACATCAGGAACATGGAGGGAGTTGATCTGGATCGGTTGAGTTTCAGAGAGCTCATGAATTTGGAGCAGCAGCTCGATAATGCTCTAAAGCGTGTTCGAACAAGAAAGAACCAACTCATTCATGACTCTGTCTCAGAACTGCACAAAAAGGCAAAGGCGTTGGAGGAGCAAAACAAGTTGCTAGAAAAGAAGgtgaaggagaaagagaagacaCCGATTGAAGGTCCACAGTGGGGGCAGACCCTAGGCCAAAACTCATTCAACTtacctccaccaccaccacagCTACAAGCACCACAAATGCTAGTTCCTTCTTTAACACTCGGTGGAACTTCCCATGCAAGAGGATCGTTGGATAAAGTTGCTGAAGTTCAAACTCGTCCAAGCAGCACCACTCTCGTGCCATCTTGGATGCTGCCCCATTTGGCTCGATA 752 0.4375 MGRGRVQLKRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSTKGKHYEYSSENSMDAILEKYERQSHYEQLATDNTESQGNISLEFSKLSTRIQVLQKNIRNMEGVDLDRLSFRELMNLEQQLDNALKRVRTRKNQLIHDSVSELHKKAKALEEQNKLLEKKVKEKEKTPIEGPQWGQTLGQNSFNLPPPPPQLQAPQMLVPSLTLGGTSHARGSLDKVAEVQTRPSSTTLVPSWMLPHLAR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01968 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva03g01968 250 Coils Coil 150 177 - -
Bva03g01968 250 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bva03g01968 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva03g01968 250 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva03g01968 250 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bva03g01968 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva03g01968 250 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 220 - -
Bva03g01968 250 Coils Coil 124 144 - -
Bva03g01968 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva03g01968 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva03g01968 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva03g01968 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva03g01968 250 PANTHER MADS BOX PROTEIN 1 220 - -
Bva03g01968 250 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01968 Bva-Chr3 17681934 17686766 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva03g01968 K-box 4.8e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01968 03 17681934 17686766 Bva04g00397 04 2354037 2360363 BWGD
Bva03g01968 03 17681934 17686766 Bva06g01123 06 8933747 8938236 ECH
Bva03g01968 03 17681934 17686766 Bva05g00579 05 2883445 2887772 ECH
Bva03g01968 03 17681934 17686766 Bva03g01968 03 17681934 17686766 ECH
Bva03g01968 03 17681934 17686766 Bva04g00397 04 2354037 2360363 ECH
Bva01g01902 01 19327945 19332635 Bva03g01968 03 17681934 17686766 ECH
Bva11g00891 11 11192434 11197020 Bva03g01968 03 17681934 17686766 ECH