Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01826 ATGGACTTTAGTCCTAAGACACATTTCTTTCAAGCTGTTCAAGCAGTCATCTCAGTCTCTGAAACGTGTTACAGGAATCTGCTAGATGTGCAACAACGATTTCTCAGTGGAAAACAACTCGAGCTTGCAGTGGCCGCCACAGCAAGACAACACGAGGACTTGGGTCATAATCTTGTCTGTACCTCGGCTTCGGATTGCTCTAACGAAAGCAAGAGGCAGAAACTGGTGCATGAATCACCATGCAAAGCAGAAAAGAAGGTAGGAAAGGGGAAAAGGAGGGcaggaaagagagaagaaaaacctAATAATGGAGTTGTTAATGTTAGAGCAAGAAGGGGACAAGCAACAGATGGGCACAATTTAGCAGAAAGGgtcagaagagaaaaaatcaataataaattgagGTATTTGAAAGAGCTTGTTCCTGGATGCCATGAGGGAAAGGGCATGTCAGTGATGTTGGatgaaataatcaattatatctGTTCCTTGCAGCATCAAGTTGAGTTTCTCTCTATGGAGCTCGCGGTTGCATCTTCTCCTTATAGGAACTTGGAGATTAACACAGCCATGGAAGTGCAGGTTCAGGAAAGCTTCATTTGTCAGCTGAAATTGTGGGGCACCTGTTTCTTGGACACAATTCAGCTGCTGCCTCTGTTGGCTATGACTGCACAAGCCATGCATGAGGCACAAGATGATTA 701 0.4108 MDFSPKTHFFQAVQAVISVSETCYRNLLDVQQRFLSGKQLELAVAATARQHEDLGHNLVCTSASDCSNESKRQKLVHESPCKAEKKVGKGKRRAGKREEKPNNGVVNVRARRGQATDGHNLAERVRREKINNKLRYLKELVPGCHEGKGMSVMLDEIINYICSLQHQVEFLSMELAVASSPYRNLEINTAMEVQVQESFICQLKLWGTCFLDTIQLLPLLAMTAQAMHEAQDD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01826 233 SMART finulus 120 170 IPR011598 GO:0046983
Bva03g01826 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 164 IPR011598 GO:0046983
Bva03g01826 233 PANTHER TRANSCRIPTION FACTOR BEE 1 61 194 - -
Bva03g01826 233 MobiDBLite consensus disorder prediction 77 105 - -
Bva03g01826 233 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 194 IPR024097 GO:0006355
Bva03g01826 233 Gene3D - 111 184 IPR036638 GO:0046983
Bva03g01826 233 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
Bva03g01826 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01826 Bva-Chr3 16466369 16470350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01826 105 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G18400 63.830 1.01e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva03g01826 HLH 6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01826 03 16466369 16470350 Bva04g00819 04 5414756 5416377 ECH
Bva03g01826 03 16466369 16470350 Bva03g01826 03 16466369 16470350 ECH
Bva01g01722 01 18197244 18198750 Bva03g01826 03 16466369 16470350 ECH
Bva11g00746 11 10359823 10361569 Bva03g01826 03 16466369 16470350 ECH