Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01787 ATGGAACCATCGCGAATATCACCGCGTTCCGCCGCCGGCAACGGCGGCAAGCTCCGGCTCATGTGTAGCTACGGCGGCCACATAGTACCTCGTCCTGGCTCAAAGTCTCTCTGCTACGTCGGCGGTGAAACCCGTATCGTCGCAATTGACCCCCGAACTGTAACCAGTCTTTCCTCTTTTGTTGCCCACCTCTCTTCTACTCTCTCTATCAACTTCTCCTTCATTATCAAGTACCAGCTTCCTCGTTTGGACCTTTGCTCTCTCATATCCGTCACTTCCGATGACGATTTCCAAATCCTCATTGAGGAGCACCAACGCCTCTCGTGTTCCCCTTTCCCTGTTGCTTCCCGCATTCGAGTATTCCTCTTCCCCTCCAAGCCCGATTCGGGATTGTGCCTCATTCGGCATCCGAAATCTGAGACTTGGTTCTCCGATGCGCTTAAGGGGGTTAAGGTTATGCAAAAGGGGCGCCATTGCTTGATGGGTTTTGACGGCGAGGCTGGTTCCGGTGTTGAAGCTCACAGCTTTCTCTCTTCTGGGCCTGAATCGATGGTTCTGGAGACGAGTTCATCTTTTGGGTCGACTTCTTCTTCGGCTTCGCTGAGCAATTTGCCTCCTTTGAGGTGTCAGGGTGAGGATAACGAGGTCAATTCGCAGGATGCTAAGGTGAAATTGACCCCTGCTGATACAGTTCCAAGtgaGAACACTGCTTCAAATATTCTTTCCCACCACCAGAAAATAGTGTACCAAGATCCTGCTGTCCATGCTTCTCCATTGGAGACTAAACTTAATGCTGAATCTGTTGAATTGGAAACTGTGGTTCCAAACATTTCCTCGGGGATCATAGTGAATAACACGAATATGAACACGGGGTATGCTTCATTTTCACAATTGAACCAAATGCAGAGGCAACCCGTGCAGTTTGTACAAGCTGGTGGAGCACACTTTATACCTCATAATCCAACTGATCTGTCGTCGTTACCTTATTACCCGCAGACATACCGGCCACAGCAGCCATTGCAGCTTCTGGTTCATCATCCTCATCAACCATACCCAATATACCTCGTACCAATCCCGCAGAGGCCACCGAACAATTTGCCTTCGCAATTTGGCGTTACTGACACTGCAACTGCTTCCAGCCAAGCTTCGTGGCATCTAGTTCACAATTTCGAGGAGCCAGTGAAGTCTGCATTGCCTCCTGATATTCTCTCTCAGAACTACCATACACATACATCCAATGCAGCAATGTCTAACGTTCATGTAACCAACAATGGAACTCAGCAACACGAAGCAGATCTTCTTTCTGCATATCAGCATCCTCCATCGCTTGCTATCGCCTGCAGCGATTCTGCTAAGCAAGGGAATGATCCTGACGACTACCTTGCTCGTGTCCAGATATACAAATCTCAGCCTCCACCACCCTCTTTGCCTTCTCAATACCAATCCATGACAGCTAGAGCAACCATGTTATCGGAGGATTTTGTGTA 1487 0.4889 MEPSRISPRSAAGNGGKLRLMCSYGGHIVPRPGSKSLCYVGGETRIVAIDPRTVTSLSSFVAHLSSTLSINFSFIIKYQLPRLDLCSLISVTSDDDFQILIEEHQRLSCSPFPVASRIRVFLFPSKPDSGLCLIRHPKSETWFSDALKGVKVMQKGRHCLMGFDGEAGSGVEAHSFLSSGPESMVLETSSSFGSTSSSASLSNLPPLRCQGEDNEVNSQDAKVKLTPADTVPSENTASNILSHHQKIVYQDPAVHASPLETKLNAESVELETVVPNISSGIIVNNTNMNTGYASFSQLNQMQRQPVQFVQAGGAHFIPHNPTDLSSLPYYPQTYRPQQPLQLLVHHPHQPYPIYLVPIPQRPPNNLPSQFGVTDTATASSQASWHLVHNFEEPVKSALPPDILSQNYHTHTSNAAMSNVHVTNNGTQQHEADLLSAYQHPPSLAIACSDSAKQGNDPDDYLARVQIYKSQPPPPSLPSQYQSMTARATMLSEDFV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01787 495 CDD PB1_UP2 21 123 - -
Bva03g01787 495 PANTHER OS05G0427100 PROTEIN-RELATED 1 493 - -
Bva03g01787 495 Pfam PB1 domain 36 124 IPR000270 GO:0005515
Bva03g01787 495 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 493 - -
Bva03g01787 495 SUPERFAMILY CAD & PB1 domains 35 129 - -
Bva03g01787 495 SMART PB1_new 32 125 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01787 Bva-Chr3 16033400 16035699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01787 18 139 MAP Kinase Kinase Kinase AT1G04700 44.262 1.04e-18 87.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01787 03 16033400 16035699 Bva04g00844 04 5543871 5547080 ECH
Bva03g01787 03 16033400 16035699 Bva03g00699 03 4174497 4176893 ECH
Bva03g01787 03 16033400 16035699 Bva03g01787 03 16033400 16035699 ECH
Bva03g01787 03 16033400 16035699 Bva04g00585 04 3841814 3845075 ECH
Bva01g01670 01 17851978 17854533 Bva03g01787 03 16033400 16035699 ECH