Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g01727 ATGGTCTTCCCATCAGTTCCAGTCTATCTAGATCCACCCAACTGGCCAAAACAGCAACATCATGGGGTTGGCTCGGAGAATCCCCAGCTTCCACCACCACCGCAGCCGCCACCTTCAACGGTTGTTGTTGGAGGTCGCGGGAGCTCAACCAGACCAGGATCAATGACTGATCGAGCCCGGTTAGCAAAGATGCCGCAGCCGGAGACAGCACTCAAGTGTCCACGATGTGAATCTACAAACACCAAGTTCTGCTACTACAACAATTACAGCCTTTCGCAGCCTCGCCACGTCTGCAAAACTTGCAGGCGATACTGGACAAGAGGAGGTGCACTGAGGAATGTTCCGGTTGGTGGTGGCTGCAGAAGGAACAAAAGAAGCAACAAAGGAAGCAGCAGATCGAAATCTCCGGCCAAAGCTGATAATCGCCAAGGTGGTTTGAACTCTACAAGTGGAAATTCTTCTAGTAGCTGCACTACTGATGTACTAAGTCATTTTCCAACTCCATCCTCATCTCAATTACCCTTCTTGCCCACTCTAAATGAGTTTAGTGATTACGTTTCTGGAGACATTGGATTTCATTTCGGCGCGATTTCGCCCTCTATGTTAGCTACAAATGGCAATCCCAGCAGCAGTAATGTTCAATATCACATTGCAAGAGCAAACGGTGGTTCTTTATTAACAAATGGTCAAAATGAGCAATGGGGTTTGCCAAATCTGCAACAAGttgttcatcatcatcatcatcagcagcagcagcagcaactgTTTCCTTTCTTGACTAATTTGGAATCACCAACTGGGTTATTTCAGGTTGGAGGAGAAAATGCTGGACCGGCGAGTTATGCCGGAGAAGGAGGCCAGCTCCGGTCGAAGACATTAGATTCTGGTGTTAGTGAAATGCCTCAGCTTACTTCagtgaaaatggaagaaaatcatGGCCTGAGTTTGTCAAAAAATCTCTTAGCTAGTTCTGGAAATGATCAATTCTGGAGTGGTGGCAATACATGGAATGACATCCCCAGTTTCAATTCTTCTACAAGCCGTATATTGTG 1052 0.442 MVFPSVPVYLDPPNWPKQQHHGVGSENPQLPPPPQPPPSTVVVGGRGSSTRPGSMTDRARLAKMPQPETALKCPRCESTNTKFCYYNNYSLSQPRHVCKTCRRYWTRGGALRNVPVGGGCRRNKRSNKGSSRSKSPAKADNRQGGLNSTSGNSSSSCTTDVLSHFPTPSSSQLPFLPTLNEFSDYVSGDIGFHFGAISPSMLATNGNPSSSNVQYHIARANGGSLLTNGQNEQWGLPNLQQVVHHHHHQQQQQQLFPFLTNLESPTGLFQVGGENAGPASYAGEGGQLRSKTLDSGVSEMPQLTSVKMEENHGLSLSKNLLASSGNDQFWSGGNTWNDIPSFNSSTSRIL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g01727 350 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Bva03g01727 350 MobiDBLite consensus disorder prediction 132 163 - -
Bva03g01727 350 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Bva03g01727 350 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 347 - -
Bva03g01727 350 MobiDBLite consensus disorder prediction 112 163 - -
Bva03g01727 350 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Bva03g01727 350 MobiDBLite consensus disorder prediction 11 65 - -
Bva03g01727 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 347 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g01727 Bva-Chr3 15528807 15530541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g01727 37 345 C2C2-Dof Transcription Factor Family AT3G55370 40.367 6.05e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva03g01727 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g01727 - - qsu:112038371 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00140 09 658890 660479 Bva03g01727 03 15528807 15530541 ECH
Bva07g02502 07 20043160 20044759 Bva03g01727 03 15528807 15530541 ECH
Bva03g01727 03 15528807 15530541 Bva03g01727 03 15528807 15530541 ECH