Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00034 ATGGGCGGCGGCGGCGTTGTTGTTGCGGTGGCAACATTTGCAATCTGGTTCCTTGGATCAAGTGAAGCGCTCGGGTTCAAGTGCAGCTCAGAGTCCGCCACGTGCCAAGCCCTCATCGATTACAAATCTCCAAATGCGACCAGTTACGGGGCCATCCAGACTCTGTTCAACATCACAAACTTCATCGACCTTGTTGGAGCCAACGCCCGTCCCCGGACCACCCTCCCTACGGCCAGTGTCGACAAAGACCAGATTGTTCGAATCCCTTTCCCCTGCAACTGCACCAACTCCATCGGATTATCCAATCATCTTCCCCGTTACATTGTGAAAGACGGGGACACTCTCTCCCATATAGCCCAGGACGTGTTCTCGGGACTCGTGACGTACCCACAAATCCAACAAGCAAACAATATACCGGACGCAAACAAAATATTGGTAGGGCAGGATTTCTGGATTCCATTGCCTTGTAGCTGCGAACAGGTGAACAGCACCACCAAAGTGGTACACTATGGACGCATCGTTGCTGCTGGTAGCTCCGTCCAACAGTTAGCTCAGCAGTCCGGCATCGCACAGGACATTCTCCTCGATCTCAATAATATGACTGATCCAAACGCCCTTCTAGCCGGTCAGATTTTCGATGTCCCCCTCCGAGCTTGTTCCTTGGGGGTGAGAAGTGGGTCACTGGACTCCTCTTCGCTTGTTGCCAATGGTACTGACCTCTACACAGCAAATGGCTGTGTCAAGTGCAGCTGTGACTCTAGCAACGACTGGACAGCGCAATGCGAGGCTTCAGGTTCTAATTCTACCTGCCCATCAATGCAATGTCAAAGTTCAGGTTCTAATTCTACCCAACTCACTATCGGCAGCAGTAACACCACATCTTCTTGCCCACGAGCAACCTGTGTCTATGATGGTTATAGCGCCACCGCCAACGCCAACGGAACTATCTTCACTAATCTTGTCACTAATTCCACTTGTCCTGCATCAGGAGCATCAAGGATCAGCTTCCATGGCTCACCTTCCAATCTTGTTTTGATTGTCATTCACTTGgtccttctttctctctatctttGCTTCTA 1079 0.5005 MGGGGVVVAVATFAIWFLGSSEALGFKCSSESATCQALIDYKSPNATSYGAIQTLFNITNFIDLVGANARPRTTLPTASVDKDQIVRIPFPCNCTNSIGLSNHLPRYIVKDGDTLSHIAQDVFSGLVTYPQIQQANNIPDANKILVGQDFWIPLPCSCEQVNSTTKVVHYGRIVAAGSSVQQLAQQSGIAQDILLDLNNMTDPNALLAGQIFDVPLRACSLGVRSGSLDSSSLVANGTDLYTANGCVKCSCDSSNDWTAQCEASGSNSTCPSMQCQSSGSNSTQLTIGSSNTTSSCPRATCVYDGYSATANANGTIFTNLVTNSTCPASGASRISFHGSPSNLVLIVIHLVLLSLYLCF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00034 359 ProSiteProfiles LysM domain profile. 170 214 IPR018392 -
Bva03g00034 359 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 24 327 - -
Bva03g00034 359 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Bva03g00034 359 CDD LysM 107 152 IPR018392 -
Bva03g00034 359 SUPERFAMILY LysM domain 106 154 IPR036779 -
Bva03g00034 359 Pfam LysM domain 107 153 IPR018392 -
Bva03g00034 359 Pfam LysM domain 174 215 IPR018392 -
Bva03g00034 359 SMART LysM_2 106 153 IPR018392 -
Bva03g00034 359 SMART LysM_2 171 215 IPR018392 -
Bva03g00034 359 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 24 327 - -
Bva03g00034 359 Gene3D LysM domain 105 167 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00034 Bva-Chr3 239738 241161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00034 5 349 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 40.845 2.09e-76 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00034 - - vvi:100257272 319.316