Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01903 ATGGGGAGAGGAAAGGTGGAGTTGAAGAGGatagagaacaaaataaatcgCCAGGTGACATTTGCAAAGAGAAGGAATGGATTGCTGAAGAAGGCTTATGAGCTCTCAGTGCTGTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGGAGGCTCTATGAGTTCTGCAGCGGCTCTAGCATGGCAAAGACAGTTGAACGGTATCAAAGATGCAGTTATGGAACCTTGGAAGTTGGCCAGCCTGCAATGGAGACacagAGGTGCTACCAAGAGTATCTCAAGATCAAATCAGAAGTTGAAGCACTACAGCGTATGCAGAGAAATCTCCTTGCGGAAGAACTGGAACACCTGGGCATAAATGATCTTGAGCGCCTGGAGCATCAGCTGGACTCTTCATTGAAGAAAATCAGATGCAACAAGACACAACATATGCTCGATCAACTCTCTGATTTGCAAATGAAGGAAGAGGCACTATTGGAAACTAATAGAGCCTTGAGGAGAAAGATGGATGAAATGAGTATATCTCTTCAACCATCATGGGAACAAAATGGAGTATGCAGCAGCCACCTAGCTCCGCAATCTGATGGATACTTTGAACCAGCACCAGTACCATGCAATAGTGATTTGCAGATTGGCTATGGTCCTGCAGTGGCGAATGAAGCAGTTGCAGTTGCAGCTGCTGGTACCTCAAGACAAAATGCTAATGATCAATTTACGCTTGGATGGATGGcctg 740 0.4432 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGRLYEFCSGSSMAKTVERYQRCSYGTLEVGQPAMETQRCYQEYLKIKSEVEALQRMQRNLLAEELEHLGINDLERLEHQLDSSLKKIRCNKTQHMLDQLSDLQMKEEALLETNRALRRKMDEMSISLQPSWEQNGVCSSHLAPQSDGYFEPAPVPCNSDLQIGYGPAVANEAVAVAAAGTSRQNANDQFTLGWMA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01903 246 Coils Coil 150 170 - -
Bva01g01903 246 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bva01g01903 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Bva01g01903 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva01g01903 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva01g01903 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva01g01903 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bva01g01903 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva01g01903 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Bva01g01903 246 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Bva01g01903 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g01903 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva01g01903 246 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g01903 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva01g01903 246 Coils Coil 97 117 - -
Bva01g01903 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01903 Bva-Chr1 19336251 19342488 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva01g01903 K-box 3.5e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01903 01 19336251 19342488 Bva01g01903 01 19336251 19342488 ECH
Bva01g01903 01 19336251 19342488 Bva03g01969 03 17695025 17701056 ECH
Bva01g01903 01 19336251 19342488 Bva04g00396 04 2343001 2348341 ECH