Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01902 atGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGTCAGGTAACATTTTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCCCATGAGATCTCTGTACTCTGTGATGCTGAGGTCGCTGTGATTGTTTTTTCTCACAAAGGAAAACTCTTTGAATATGCCACTGATTcttgCATGGAGAAGATACTGGAACGCTACGAAAGGTATGCCTACGCAGAGAGACAGCTTGTGAGAAATGATGATTCTGAGACCCAGGGAAACTGGACCATTGAGTATACAAGACTCAAGGCTAAGATTGACCTCCTGCAGAGGAACCAGAGgCACTATATGGGGGAGGATTTGGGTTCATTGAGCCTGAAGGAGCTGCAAAATCTGGAGCAACAGTTAGATACTTCTCTCAAACAGATCAGGACACGCAAaAACCAACTCATGTACGAGTCCATTTCTGAGCTACAGAAAAAGGAGAAAGTGATTGTGGAGCAGAATAACATGCTAGCAAAGAAGAtcaaggagaaggagaaggctGTAGCACAGCACACTCAATGGGAGCAACCAGACCATGGACCTAATACATCTTTCTTACTACCACATACACTCCCCAGCTTGAATATAGGTGGCCTTTACAGAGAGGAAGCCCCAGATATGGGGAGGAATGATCAGCTTGACCTGACTCTTGAGCCACTCTATCCATGCCACCTTGGCTGCTTTGCTGCATG 728 0.4437 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVAVIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVRNDDSETQGNWTIEYTRLKAKIDLLQRNQRHYMGEDLGSLSLKELQNLEQQLDTSLKQIRTRKNQLMYESISELQKKEKVIVEQNNMLAKKIKEKEKAVAQHTQWEQPDHGPNTSFLLPHTLPSLNIGGLYREEAPDMGRNDQLDLTLEPLYPCHLGCFAA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01902 242 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bva01g01902 242 Coils Coil 123 146 - -
Bva01g01902 242 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bva01g01902 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva01g01902 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Bva01g01902 242 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 221 - -
Bva01g01902 242 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bva01g01902 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva01g01902 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva01g01902 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva01g01902 242 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g01902 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva01g01902 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva01g01902 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva01g01902 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01902 Bva-Chr1 19327945 19332635 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva01g01902 K-box 5.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01902 01 19327945 19332635 Bva01g01902 01 19327945 19332635 ECH
Bva01g01902 01 19327945 19332635 Bva03g01968 03 17681934 17686766 ECH
Bva01g01902 01 19327945 19332635 Bva04g00397 04 2354037 2360363 ECH