Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01819 ATGGTTATGAAGCACCTAGCTCTAGTTCTAGCCCATTTGAAATGGGCATTagatttcttcctcttccatCCTTTCTACAGCCTTTTCCAATCTGGTATGCCAATAGTCGGAGACAAAGTGAATATTTGCCACTATGAGCCAAATCCTGGCGCTAATGAAGAAGTGGATTGTGCTGTTTGCCTCTGCAAGATCAGAGAAGGTGAGGAGATTAGGGTGTTGAGGTGTGAGCATCTCTTCCACAGAGGTTGTTTGGATAGATGGGTTGGTTTCAATGTCAGTTTTGCTACTTGCCCTCTTTGCAGAGACCTTCTGGGTCGGCGTCCTTGTAGGGCAATCACTGAGCATGGAGCTGAGGTCATATCctttcaattttggtctttcagtTCCAGTGACCGTGAGAGATGGTGGCTACGCTG 416 0.4303 MVMKHLALVLAHLKWALDFFLFHPFYSLFQSGMPIVGDKVNICHYEPNPGANEEVDCAVCLCKIREGEEIRVLRCEHLFHRGCLDRWVGFNVSFATCPLCRDLLGRRPCRAITEHGAEVISFQFWSFSSSDRERWWLR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01819 138 SUPERFAMILY RING/U-box 51 105 - -
Bva01g01819 138 ProSiteProfiles Zinc finger RING-type profile. 57 101 IPR001841 -
Bva01g01819 138 Pfam Ring finger domain 56 101 IPR001841 -
Bva01g01819 138 SMART ring_2 57 100 IPR001841 -
Bva01g01819 138 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 5 131 - -
Bva01g01819 138 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 131 - -
Bva01g01819 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01819 Bva-Chr1 18837765 18838610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01819 56 121 C3H Transcription Factor Family AT1G15100 47.826 1.28e-13 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01819 01 18837765 18838610 Bva01g01819 01 18837765 18838610 ECH