Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01812 ATGGCAACGATTCAAGCCGATCAGGTCAAGCAGCTCAAAGACATATTCACCCGCTTTGACTTGGACTCCGACGGCAGCCTGACCCAACTCGAGCTCGCCGCCCTCCTCCGGTCCCTCGGCATCAAACCGGCGAGCGGCGATGAAGTCTGCGCCCTGCTTGCCAAATTGGACAAGAATGGCAACGGTTACATCGAATTTGAGGAGCTTGCGCATGCCATTTTGCCTGACATGAACGAAGAGGTGCTCATCAACCAGGAACAGCTCTTGGAAGTGTTCAGGTCATTCGACAGGGACGGCAACGGCCAAATCACCGCCTCCGAGCTCGCCGGCTCCATGGCCAAGATGGGTCACCCCTTGACCTACCGTGAGCTTTGTGATATGATGAGAGAGGCAGATAGCAATGGCGATGGTGTCATAAGCTTCAATGAGTTTACCAGCATAATGGCTAAGTCTGCTGCTGAATTTCTTGGCCTCAAgcttgctaatta 488 0.5266 MATIQADQVKQLKDIFTRFDLDSDGSLTQLELAALLRSLGIKPASGDEVCALLAKLDKNGNGYIEFEELAHAILPDMNEEVLINQEQLLEVFRSFDRDGNGQITASELAGSMAKMGHPLTYRELCDMMREADSNGDGVISFNEFTSIMAKSAAEFLGLKLAN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01812 162 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Bva01g01812 162 Gene3D - 1 80 - -
Bva01g01812 162 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Bva01g01812 162 Pfam EF-hand domain pair 86 148 IPR002048 GO:0005509
Bva01g01812 162 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Bva01g01812 162 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Bva01g01812 162 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Bva01g01812 162 PANTHER BNACNNG21080D PROTEIN 4 161 - -
Bva01g01812 162 SMART efh_1 11 39 IPR002048 GO:0005509
Bva01g01812 162 SMART efh_1 87 115 IPR002048 GO:0005509
Bva01g01812 162 SMART efh_1 48 76 IPR002048 GO:0005509
Bva01g01812 162 SMART efh_1 123 151 IPR002048 GO:0005509
Bva01g01812 162 CDD EFh 87 149 IPR002048 GO:0005509
Bva01g01812 162 Gene3D - 81 158 - -
Bva01g01812 162 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Bva01g01812 162 SUPERFAMILY EF-hand 4 149 IPR011992 -
Bva01g01812 162 PANTHER CALCIUM BINDING PROTEIN 4 161 - -
Bva01g01812 162 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Bva01g01812 162 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Bva01g01812 162 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01812 Bva-Chr1 18809873 18810766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01812 2 158 EF-hand Containing Proteins AT3G25600 78.981 2.35e-89 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01812 01 18809873 18810766 Bva01g01812 01 18809873 18810766 ECH