Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01788 ATGCTGGCTCAGAGAGGACTAATGAGCTGGAGGAGGGTGGGGAAGTCTCTTCTAGCTCTGTTGGGTCATGGCTTGCTTTTCTCATTCACGATTCTGCTGGTTCTCAAGGTTGACCATGTCGTCCATCACTCATGGTGGATCATATTTTCACCTCTATGGTTTTTTCATGCTGCTGTAGCACGTAGCAGGTTCTCTTTGCCGGCTCCTTCAATGCCTCATGATCGCAATTGGGCTCCTTGTCATGCCGTCATTGCAACACCATTACTTGTTGCTTTTGAGCTACTTCTTTGTATACATCTCGGCAGCAGCTATGTGGTTAATTTGAAGATTGTCTTCCTACCCCTCTTGGCTTTTGAAGTGGCAATTTTGGTTGATAACATCAGGATGTGTAGAGCTTTGATGCCTGGAGATGATGAAACTATGACTGATGATGCAATATGGGAAACCCTTCCTCACTTCTGGGTTTCAATTTCCATGGTCTTTCTTATTGCTGCTACATTATTCACTCTTCTAAAGATATGTGGTGACGTTGCTGCTCTTGGTTGGTGGGATTTGTTTATTAACTATGGCATTGCAGAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGTATAATCCAACAATTCATGGGAATTGTAACATTACAGACCCCTGtacatcatcatcattttcatcatcatttaATATAAGGTACCTGGACTGGGATAGAGGCTTTGTAGTTTCATCAGATGACGATAGGCCACAGATTGGATTATGCAACTTGCAAGACATTGGTGGGCACATCATGAAGATTCCATTCATTGCTTTTCAAATATTGTTGTTTATGCGCTTAGAGGGAACACCAGCTAGTGCCAGAGATATACCATTATGGGTTGTTTTTTCTCCGCTACTTTTGTTGCAAGGAGCATCAAAAGCCCGGGAGTGCTTTGGGTTCTACCATCATGGATCAAGGTTGCTTGGTTGGTGGTCAATTGACCAAGGAAGTCGAGAAGAACGTGCTAGACTTTATTGTGCTGGGAATTCTGGgtATAATACTTTCTCACCTGATACTGTGAAGAAAATGCCTAAAGCAGATCTTGTTGATGAGATCTGGAGACTGCAAGCTGCACTGGGTGAGCAGACAGAAGTTACAAAATCTAGCCAGGAGGAGTATGAAAGACTTCAAAATGAAAAGATCCTATGTAGAGTTTGCTTTGAGGAGCAAATTAATGTAGTCTTGCTTCCATGTAGGCATCACATTCTTTGCAGCTCTTGTGCAGATAAATGTAAAAGGTGCCCCATTTGCCGAGTCACCATTGAGGAACAAATGCCTATACATGATGTGTA 1325 0.4196 MLAQRGLMSWRRVGKSLLALLGHGLLFSFTILLVLKVDHVVHHSWWIIFSPLWFFHAAVARSRFSLPAPSMPHDRNWAPCHAVIATPLLVAFELLLCIHLGSSYVVNLKIVFLPLLAFEVAILVDNIRMCRALMPGDDETMTDDAIWETLPHFWVSISMVFLIAATLFTLLKICGDVAALGWWDLFINYGIAECFAFLVCTKWYNPTIHGNCNITDPCTSSSFSSSFNIRYLDWDRGFVVSSDDDRPQIGLCNLQDIGGHIMKIPFIAFQILLFMRLEGTPASARDIPLWVVFSPLLLLQGASKARECFGFYHHGSRLLGWWSIDQGSREERARLYCAGNSGYNTFSPDTVKKMPKADLVDEIWRLQAALGEQTEVTKSSQEEYERLQNEKILCRVCFEEQINVVLLPCRHHILCSSCADKCKRCPICRVTIEEQMPIHDV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01788 441 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 303 - -
Bva01g01788 441 SUPERFAMILY RING/U-box 385 438 - -
Bva01g01788 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 439 IPR013083 -
Bva01g01788 441 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 303 441 - -
Bva01g01788 441 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 303 441 - -
Bva01g01788 441 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 4 303 - -
Bva01g01788 441 Pfam Zinc finger, C3HC4 type (RING finger) 392 434 - -
Bva01g01788 441 Pfam Transmembrane Fragile-X-F protein 35 299 IPR019396 -
Bva01g01788 441 Coils Coil 370 390 - -
Bva01g01788 441 ProSiteProfiles Zinc finger RING-type profile. 394 429 IPR001841 -
Bva01g01788 441 SMART ring_2 394 428 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01788 Bva-Chr1 18613165 18619862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01788 8 441 C3H Transcription Factor Family AT1G73950 59.322 0.0 554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01788 01 18613165 18619862 Bva01g01788 01 18613165 18619862 ECH