Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01780 ATGGATGGGGGTAGTTGCTTAGATGAAAGCACCACAACTGATTCTGTTTCTGCATCCCTTTCTCCGGTGACCACTCTTACTTCGCCGGTTTCGCCGACCCAGAAGCTGTCTCCGCCGCCGAATAGTCTGTACCGTGTCGGCAGCGGTGCCAGCACCATCGTGGACCCCGACAGCGGAGCCGAGGCCGAGTCCCGTAAGTTGCCGTCGTCGAAATACAAAGGAGTGGTGCCCCAACCCAATGGCCGCTGGGGCGCTCAGATTTACGAGAAGCACCAGCGTGTGTGGTTGGGCACGTTCAACGAGGAAGGCGAAGCCGCCAGAGCGTACGACATCGCGGCACAAAGGTTCCGTGGGAAAGACGCCGTCACGAACTTCAAGCCTCTTGCCGAAGGCACCGCCGGAGACAACGACGACGACGATGTCGAGACGGCGTTCCTCCACGCGCATTCCAAGGCCGAGATCGTCGACATGCTCAGAAAACACACGTACAACGACGAGCTTGAACAGAGCAAGAAGAAGTACGGGTTATTAGACGGTAACGGAAAGAGGATAAAAAACGAAGGGACCGTTAACGGTAGCGGTTTGATATTCGGGTCGGGGACGTATTCGGATCGGGTTCAGAAAGCGCGTGAACAGCTTTTCGAAAAAGTGGTTACACCGAGCGATGTGGGCAAGTTGAACCGATTAGTTATACCGAAGCAGCATGCGGAGAAGCACTTCCCGTTACAGAGCGGAAGCGCTTCTGCTTCTTGCGCAACGAAGGGAgtgcttttgaattttgaagacGTTGGAGGAAAAGTGTGGCGATTTCGATACTCGTACTGGAATAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGTGACACCGTTAGCTTCCACAAGTCGACTGGACCGGACAACCAGCTATACATTGATTGGAAAGCAAGGCAGATTGATTGCGGTAATAACAACGTCACCAACAATTTCCTGAACCCGATCGGACCTACGGTTGAACCGGTTCAGATGGTGAGGTTATTTGGGGTcaacattttgaaaataccACCTTCTGCTGCTGTGGAAGCGATTGCAGGAAGCTGCAATGGGATCAAGAGGAAAGAAATGGAGCTTTTTACGTTAGAGTGTAGTAAGAAGCCCAAGGTAATTGGGGCTTTGTA 1190 0.5185 MDGGSCLDESTTTDSVSASLSPVTTLTSPVSPTQKLSPPPNSLYRVGSGASTIVDPDSGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEGEAARAYDIAAQRFRGKDAVTNFKPLAEGTAGDNDDDDVETAFLHAHSKAEIVDMLRKHTYNDELEQSKKKYGLLDGNGKRIKNEGTVNGSGLIFGSGTYSDRVQKAREQLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQSGSASASCATKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHKSTGPDNQLYIDWKARQIDCGNNNVTNNFLNPIGPTVEPVQMVRLFGVNILKIPPSAAVEAIAGSCNGIKRKEMELFTLECSKKPKVIGAL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01780 396 Pfam B3 DNA binding domain 214 318 IPR003340 GO:0003677
Bva01g01780 396 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Bva01g01780 396 SUPERFAMILY DNA-binding pseudobarrel domain 212 309 IPR015300 -
Bva01g01780 396 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 4 396 - -
Bva01g01780 396 MobiDBLite consensus disorder prediction 1 48 - -
Bva01g01780 396 MobiDBLite consensus disorder prediction 1 75 - -
Bva01g01780 396 SUPERFAMILY DNA-binding domain 70 126 IPR016177 GO:0003677
Bva01g01780 396 Gene3D - 202 330 IPR015300 -
Bva01g01780 396 SMART B3_2 214 322 IPR003340 GO:0003677
Bva01g01780 396 CDD AP2 70 125 IPR001471 GO:0003700|GO:0006355
Bva01g01780 396 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Bva01g01780 396 ProSiteProfiles B3 DNA-binding domain profile. 214 322 IPR003340 GO:0003677
Bva01g01780 396 CDD B3_DNA 213 316 IPR003340 GO:0003677
Bva01g01780 396 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
Bva01g01780 396 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 396 IPR044800 GO:0003700
Bva01g01780 396 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01780 Bva-Chr1 18546786 18548524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01780 34 396 RAV Transcription Factor Family AT1G68840 62.534 1.27e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Bva01g01780 B3 3.7e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01780 01 18546786 18548524 Bva01g01780 01 18546786 18548524 ECH