Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01777 ATGCAAAGTCATCACTCTTTCTCCTACATATCCTCTAGTGGAAGTACTGCCTACTTAGAAcctgatgaagatgaagaagaattcatatctctctctcttggcCTTCCTGGCCAACACACCACTGGTAACCCCACTAACatttcctcctcttcttcaatTCACTCTTCAGCAAATCTCCACCACCACTACCACAACCACCAACACCCAAACCCTACCTCTGATGAACAAAGTGGTGTAACTGTGGCCCTCCATATTGGCCTGCCCACCACTGCACCAACCACCTCTTCTGCAAAACCTGATCAATTGCCCCCTCCCCAATACTGGATCCCTTCCCCAGCCCAAATCCTCATCGGACCCACCCAGTTCTCATGTACGGTCTGCAACAAAACATTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGTTCACAGTATAGAAAAGGGCCAGAATCATTGCGAGGGACAAAACCAGCTTCTTCAATGCTGAGACTTCCATGCTATTGCTGCGCTGAGGGTTGCAAGAACAACATAGAGCATCCAAGATCAAGACCACTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGAAAGCATGGAGCCAAGCCTTTTGGGTGCAGAAAGTGTGGGAAGCCATTTGCTGTGCGAGGAGATTGGAGGACACACGAGAAAAATTGTGGGAAGCTATGGTTTTGCATCTGTGGTTCTGATTTTAAGCACAAGAGATCTCTTAAGGACCATGTTCGTGCTTTTGGAGACGGCCATGCTCCACACACTGTGGAGACTAGCTGTGGCCAAATGGGTGAAGAAGATGGAGATGAAGATGACGAAGATGAtcatgaagatgatgatgatgataacaGCAGTGAAGTGGTAGTTTATGGGAACCACCATGGCTCTAGTAATCTTGGgtctatttactttta 935 0.4278 MQSHHSFSYISSSGSTAYLEPDEDEEEFISLSLGLPGQHTTGNPTNISSSSSIHSSANLHHHYHNHQHPNPTSDEQSGVTVALHIGLPTTAPTTSSAKPDQLPPPQYWIPSPAQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVETSCGQMGEEDGDEDDEDDHEDDDDDNSSEVVVYGNHHGSSNLGSIYF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01777 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Bva01g01777 311 PANTHER ZINC FINGER PROTEIN WIP6 1 292 - -
Bva01g01777 311 PANTHER ZINC FINGER PROTEIN WIP2 1 292 IPR043584 GO:0003700|GO:0010468
Bva01g01777 311 SUPERFAMILY beta-beta-alpha zinc fingers 190 227 IPR036236 -
Bva01g01777 311 SUPERFAMILY beta-beta-alpha zinc fingers 118 143 IPR036236 -
Bva01g01777 311 MobiDBLite consensus disorder prediction 296 311 - -
Bva01g01777 311 MobiDBLite consensus disorder prediction 34 54 - -
Bva01g01777 311 MobiDBLite consensus disorder prediction 1 18 - -
Bva01g01777 311 Gene3D Classic Zinc Finger 121 144 - -
Bva01g01777 311 Gene3D Classic Zinc Finger 163 254 - -
Bva01g01777 311 MobiDBLite consensus disorder prediction 260 311 - -
Bva01g01777 311 MobiDBLite consensus disorder prediction 1 54 - -
Bva01g01777 311 SMART c2h2final6 207 227 IPR013087 -
Bva01g01777 311 SMART c2h2final6 122 144 IPR013087 -
Bva01g01777 311 SMART c2h2final6 170 202 IPR013087 -
Bva01g01777 311 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Bva01g01777 311 MobiDBLite consensus disorder prediction 270 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01777 Bva-Chr1 18527997 18529178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01777 25 271 C2H2 Transcription Factor Family AT1G13290 68.898 1.70e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva01g01777 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01777 01 18527997 18529178 Bva01g01777 01 18527997 18529178 ECH