LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva01g01755	ATggcttctccttttctttccaataCCACTGCCCCCAATTCCACCAccatttccttctcttcctCCGTCTCCACCTCCCTCCCATGGCGGAGATTCATCGCATTTCCCGCCAAACCCCGCCGGAGAACCTTGTCCGTTCAATCCAAGATCAGGGAAATCTTCATGCCCGCACTCAGCTCCACCATGACCGAGGGCAGGATTGTATCCTGGGTTAAATCTGAAGGAGACGTTCTGTCCAAGGGCGAGAGCGTCGTCGTCGTCGAATCTGACAAAGCTGACATGGACGTTGAGACTTTCTACGATGGGATTCTCGCTGCTATTGTTGTTGGCGAAGGTGAAACCGCTCCTGTTGGTGCTCCAATTGGGATATTGGCGGAGACCGAAGAGGAAATTGCTGAGGCCAAGGCGAAAGCGGCAAAAGCCTCTTCTGCTCCTACACCTGTTGCTCCCAGTCCTTCACCGGACACTTCGAATCCTGCTCCAGCTGTTTCTCAGTCTCCCCCTCCACCAACTAAGGTGGTTTCTGATGGCCCGAGGAAGACCGTGGCCACACCTTATGCAAAGAAGCTCGCGAAGCAGCATAAGGTAGATATTGGATCCGTGGTCGGGACTGGTTCATATGGACGGATTACTCCTTCCGATGTGGAGGCGGCTGCGGGAATTGCACCTTCCAAGAGCAATGTGGCTCCGGCGGCGGCTGCAGCTACTGCTCCAGTGGCTGCAACTACACCAAAAGCTGCTGCTGCTTCGTCAGCTGCTCCACCTCCAATTCCAGGTTCTACTGTAACTCCTTTCACAACCATGCAATCAGCGGTTTCAAAGAACATGGTGGATAGTCTTTCCGTGCCTACATTCCGTGTTGGCTATCCTGTTACCACTGACGCCCTTGATGCTCTATATGAGAGGGTGAAACCAAAGGGTGTGACTATGACAGCCATTCTGGCGAAGGCAGCTGCAATGGCACTTGTTCAACATCCAGTAGTAAATGCGAGCTGCAAAGATGGGAAGAGCTTCACTTATAATAGTAACATAAACGTAGCTGTTGCTGTGGCAATCAACGGTGGTTTAATAACGCCTGTTCTTCAGGATGCAGATAAGTTGGATCTCTATCTCTTGTCCCAAAAATGGAAAGAGCTGGTGGGAAAAGCTCGTGCGAAGCAGTTGCAACCTCATGAATATAATTCAGGAACTTTCACGCTCTCCAATTTGGGCATGTTTGGAGTGGACCGGTTTGATGCCATATTACCACCAGGCCAGGGGGCTATCATGGCTGTAGGAGCCTCAAAGCCTACTGTTCTAGCTGATAAGGATGGATTCTTCAGTGTGAAAAGCAAAATGCTGgTGAATGTAACAGCTGATCACCGGATAATATATGGTGCTGACTTAGCCGCCTTCCTTCAAACATTCTCGAAAATCATTGAAGACCCAGAAAGCCTAACATTGTA	1445	0.4907	MASPFLSNTTAPNSTTISFSSSVSTSLPWRRFIAFPAKPRRRTLSVQSKIREIFMPALSSTMTEGRIVSWVKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGEGETAPVGAPIGILAETEEEIAEAKAKAAKASSAPTPVAPSPSPDTSNPAPAVSQSPPPPTKVVSDGPRKTVATPYAKKLAKQHKVDIGSVVGTGSYGRITPSDVEAAAGIAPSKSNVAPAAAAATAPVAATTPKAAAASSAAPPPIPGSTVTPFTTMQSAVSKNMVDSLSVPTFRVGYPVTTDALDALYERVKPKGVTMTAILAKAAAMALVQHPVVNASCKDGKSFTYNSNINVAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVGKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKSKMLVNVTADHRIIYGADLAAFLQTFSKIIEDPESLTL	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva01g01755	481	SUPERFAMILY	CoA-dependent acyltransferases	259	480	-	-
	Bva01g01755	481	Pfam	e3 binding domain	182	216	IPR004167	GO:0016746
	Bva01g01755	481	Gene3D	-	45	149	-	-
	Bva01g01755	481	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	75	104	IPR003016	-
	Bva01g01755	481	CDD	lipoyl_domain	52	124	-	-
	Bva01g01755	481	Pfam	Biotin-requiring enzyme	52	123	IPR000089	-
	Bva01g01755	481	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	260	480	IPR001078	GO:0016746
	Bva01g01755	481	ProSiteProfiles	Biotinyl/lipoyl domain profile.	50	125	IPR000089	-
	Bva01g01755	481	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC	13	481	-	-
	Bva01g01755	481	Gene3D	-	178	220	IPR036625	GO:0016746
	Bva01g01755	481	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	175	219	IPR036625	GO:0016746
	Bva01g01755	481	PANTHER	DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED	13	481	IPR045257	GO:0006086\|GO:0045254
	Bva01g01755	481	Coils	Coil	124	144	-	-
	Bva01g01755	481	MobiDBLite	consensus disorder prediction	1	21	-	-
	Bva01g01755	481	MobiDBLite	consensus disorder prediction	134	180	-	-
	Bva01g01755	481	MobiDBLite	consensus disorder prediction	147	174	-	-
	Bva01g01755	481	Gene3D	-	242	480	IPR023213	-
	Bva01g01755	481	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	182	219	IPR004167	GO:0016746
	Bva01g01755	481	SUPERFAMILY	Single hybrid motif	49	144	IPR011053	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva01g01755	Bva-Chr1	18396533	18399806	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva01g01755	15	481	Acyl Lipid Metabolism Gene Families	AT3G25860	76.433	0.0	666

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva01g01755	01	18396533	18399806	Bva01g01755	01	18396533	18399806	ECH