Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01744 ATGACTTCTGCTAAGAACGTGGCAAACGCCGTCGGTGGCAAGACCGCAAGAGCCTGTGATAGCTGTATAAAGAAGCGGGCACGGTGGTATTGTGCTGCCGACGATGCTTTTCTCTGTCAAACTTGTGATTCTTCGGTGCACTCGGCGAATCCCTTGGCTCGCAGGCATGAAAGGGTTCGCTTGAAAACGGCGTCGTGCAAGTCGTCGGATGTTGCAACTTCTCTTCCGTCGTGGCACCGTGGGTTCACCAAGAAGGCTCGAACACCGCGACATGGGAAACACTACTTGACCAATCATCAAACATCTAAAGTACAAGATGAGCTTGCCGTGAGGAACCCTTTTCATCTGGTGCCGGAAGTGGGTTCCGATGAGTCGAATTCGTACCATGAAAATGAAGCACAGCTGCTTTATCGGGTACCCATTTTTGATCCCTTCGTGGCCGAGCTGTGTACGCCTCCATCGTCGGTGACGTCAGCTGAAGCAGTAGCAGCAACTACAATGGCGAGTCCTGACGAGGTGGAGAACAAGCCTAATAAAAGCATCGAAAGCAAAGCTCTTTCGGGTAATAACAATGAAGGGGTTGAAAACTATCATGGGTTTCTTCCATCTGATATTGAACTTGCTGAATTTGCAGCTGATGTTGAGAGCTTATTGGGTAGGGGGCTAGAAAATGAGTGTATCGGCATGGAAGAGTTGGGTCTGATAGATTGTAAAGAAGAGGATTCGAGAAAGGTGAagatggaagaagaagagggcGTGGGAATGACAGCTGCTGCTACTGCAGCTTGCAAGGTTGAGATGGATCAGATAGAGATGGGGAGAGAaccatttgaattgaatttcgATTATGACTCTGCTGAAGCACCAGAAGAAGTGGAGAAGCTTGGTTTCGATATGAGCAAAGATATCAAAAATTGTGGAGAAATCAGTGACAATAACCAGGTGAAGAAGACGAAGATATTGTTGAGGCTTGATTACGAGGCTGTAATCACTGCCTGGGCAAGCCAAAAGTGCCCCTGGACTAATGGGAGCAAACCAGCTTTTGACCCTGATGAGTCCTGGCCCGATTGCATGGGTGAGCTTCACTATCCATATGGTAACGATTTGGGTTTATACGGGATTCACCCGGCAATAGCAGACGGTGGAAGAGAGGCGAGGGTGTCGAGGTACAGAGAGAAGCGTCGGACGAGGTtgttttctaagaaaataagGTACGAAGTTCGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGGTTTGTGAAGAGGGCTTCTTTTGCAGCAGCACCGCCTAGTTTCCCTTTGCTGAGCAAATG 1322 0.4667 MTSAKNVANAVGGKTARACDSCIKKRARWYCAADDAFLCQTCDSSVHSANPLARRHERVRLKTASCKSSDVATSLPSWHRGFTKKARTPRHGKHYLTNHQTSKVQDELAVRNPFHLVPEVGSDESNSYHENEAQLLYRVPIFDPFVAELCTPPSSVTSAEAVAATTMASPDEVENKPNKSIESKALSGNNNEGVENYHGFLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDCKEEDSRKVKMEEEEGVGMTAAATAACKVEMDQIEMGREPFELNFDYDSAEAPEEVEKLGFDMSKDIKNCGEISDNNQVKKTKILLRLDYEAVITAWASQKCPWTNGSKPAFDPDESWPDCMGELHYPYGNDLGLYGIHPAIADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAAAPPSFPLLSK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01744 440 CDD Bbox1_BBX-like 18 61 - -
Bva01g01744 440 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 431 - -
Bva01g01744 440 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Bva01g01744 440 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 431 - -
Bva01g01744 440 ProSiteProfiles CCT domain profile. 383 425 IPR010402 GO:0005515
Bva01g01744 440 Pfam CCT motif 383 425 IPR010402 GO:0005515
Bva01g01744 440 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Bva01g01744 440 SMART bboxneu5 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01744 Bva-Chr1 18315328 18317141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01744 5 425 C2C2-CO-like Transcription Factor Family AT1G25440 45.536 4.02e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva01g01744 zf-B_box 1.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01744 01 18315328 18317141 Bva01g01744 01 18315328 18317141 ECH