Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01722 ATGCCTCTCTCCACTGAGACCCTTTTGGGTCAACACCATAATCTTCCTATTTTTGAAGCCTTCAATCGTTCTGAGGATTACCCAAATCCCATCCCAATGTTTCAGTCATCAGGCTCTGCCTATGGAGCTGGATTTGATGATGAGCAAGTCAAGATGGTGTCTCTTTCAGAGAGCTTAGgcaattcttcttcttctccagtATCTGGGACTGCTTCTGCTGAAATGAATAAGACTGTGGGAGgaaacaaaaggaagagaaacaaTGGCAGAGTTGAAGATAAATCAAAGGAAGTGATCCATGTAAGGGCAAAGAGAGGCCAAGCTACTGATAGCCACAGTTTATCAGAAAGGGTAAGAAGAGAGAAGATCAATGAGAAGCTGAAGTGCTTGCAGGATTTGGTTCCAGGGTGCTACAAGGCAATGGGAATGGCAGTTATGCTAGATGTGATAATAAACTATGTTCAATCACTGCAGCAACAGATTGAGTTTCTGTCCCTGAAGCTTTCAGCAGCAAGTATGTACTTCGATATCAACACTTCAGAGATGTATGCATCTGAAACCATGCAGAGCACTAGCACTTATGCAATCCAAGAGATGGAAAAAATGGCAGGAGAAGGTTATGGAGGAGGACTCTCTTCTTGTTATTTCAACCCAACATGGCCAATTTA 668 0.4042 MPLSTETLLGQHHNLPIFEAFNRSEDYPNPIPMFQSSGSAYGAGFDDEQVKMVSLSESLGNSSSSPVSGTASAEMNKTVGGNKRKRNNGRVEDKSKEVIHVRAKRGQATDSHSLSERVRREKINEKLKCLQDLVPGCYKAMGMAVMLDVIINYVQSLQQQIEFLSLKLSAASMYFDINTSEMYASETMQSTSTYAIQEMEKMAGEGYGGGLSSCYFNPTWPI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01722 222 MobiDBLite consensus disorder prediction 56 77 - -
Bva01g01722 222 Gene3D - 102 165 IPR036638 GO:0046983
Bva01g01722 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 157 IPR011598 GO:0046983
Bva01g01722 222 Pfam Helix-loop-helix DNA-binding domain 111 140 IPR011598 GO:0046983
Bva01g01722 222 CDD bHLH_AtBPE_like 97 178 - -
Bva01g01722 222 MobiDBLite consensus disorder prediction 56 96 - -
Bva01g01722 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 174 IPR036638 GO:0046983
Bva01g01722 222 PANTHER TRANSCRIPTION FACTOR BHLH75 62 206 - -
Bva01g01722 222 MobiDBLite consensus disorder prediction 79 96 - -
Bva01g01722 222 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 206 IPR024097 GO:0006355
Bva01g01722 222 SMART finulus 113 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01722 Bva-Chr1 18197244 18198750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01722 88 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 66.116 4.48e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva01g01722 HLH 4.7e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01722 01 18197244 18198750 Bva01g01722 01 18197244 18198750 ECH
Bva01g01722 01 18197244 18198750 Bva04g00819 04 5414756 5416377 ECH
Bva01g01722 01 18197244 18198750 Bva03g01826 03 16466369 16470350 ECH