Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01719 ATGTCAAGTCCTAAAGAAGAAAGTGAGCTGAGAAAAGGGCCGTGGACTCTAGAAGAAGACAGCTTGCTCATACATTATATTACCCGGCACGGCGAGGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACAGGGAAGAGTTGCAGACTGAGATGGCTGAATTACCTGAAACCAGATATCAAAAGAGGGAATCTTACTCCACATGAACAGCTTTTGATCCTTGAACTCCATTCCAAGTGGGGTAATAGGTGGTCAAAAATTGCTCAGCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTACTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTTAACATCGAATCTGGTAGCAAGAGGTTCTTTGATGCTGTACGATGTTTTTGGATGCCAAGGTTGCTGCAAAAGATGGAACAGAACTCGTCCCCCTCCCCTTACTCCTCTGTGCCAAACATGAACTTTGGCAATTCAGCAGAAGCTTCAATACCAAACACTAGACTTCCATCTCTGTCTCCATCACCTCCTCCACAAAGGGAATTCATTGATGCTGCAAATCATTCAAGCTCTATGTCTAATGGCATCAGCAATTTTTCTTCTGATCAGTGTTCGATGAAATTCTCTCAGATGCCTGAAATATCAGAACACCCAACTGGTCCTTTCCAATTGTATGAGCACAATGTTCATCACAACAATCAAATCCAAGATAATTGGTACATGAACACCAATAGTTATGGCATGGAAGGTGTAAACTTGGATACCCTTTCAATAATGGAAAGCTGTGACAATATTCCACAGCTAGATTGTCACACTGGAGAGAGTGATTGGGTGTTTGGCATGGGTGACACTTTATGGAACATGGATGCAATGTG 884 0.431 MSSPKEESELRKGPWTLEEDSLLIHYITRHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPHEQLLILELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFFDAVRCFWMPRLLQKMEQNSSPSPYSSVPNMNFGNSAEASIPNTRLPSLSPSPPPQREFIDAANHSSSMSNGISNFSSDQCSMKFSQMPEISEHPTGPFQLYEHNVHHNNQIQDNWYMNTNSYGMEGVNLDTLSIMESCDNIPQLDCHTGESDWVFGMGDTLWNMDAM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01719 294 MobiDBLite consensus disorder prediction 144 172 - -
Bva01g01719 294 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Bva01g01719 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Bva01g01719 294 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 5 292 - -
Bva01g01719 294 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Bva01g01719 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Bva01g01719 294 Gene3D - 12 64 - -
Bva01g01719 294 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Bva01g01719 294 CDD SANT 69 108 IPR001005 -
Bva01g01719 294 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 292 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva01g01719 294 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Bva01g01719 294 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Bva01g01719 294 MobiDBLite consensus disorder prediction 144 186 - -
Bva01g01719 294 CDD SANT 14 59 IPR001005 -
Bva01g01719 294 SMART sant 64 112 IPR001005 -
Bva01g01719 294 SMART sant 11 61 IPR001005 -
Bva01g01719 294 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 27 36 IPR001345 GO:0003824
Bva01g01719 294 Gene3D - 69 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01719 Bva-Chr1 18181468 18182968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01719 7 233 MYB Transcription Factor Family AT1G68320 59.914 9.49e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva01g01719 Myb_DNA-binding 1.6e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01719 01 18181468 18182968 Bva01g01719 01 18181468 18182968 ECH