Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01711 ATGGCGATGATGCCGTTTTCGGACGGAGCTGGAGGTGTAGCTATAATGTCTGGCACTGTGAACTCAGTTGATTCTTCGCCTTCAAAGAATTGCTTGAAGAACTCGCTACTGAAATCGCCGATACTgatattctctttcttccacAAAGCTATACGTTCTGAGCTCGAGAGCCTCCACCGAGTCGCCTTGGATTTTGCCACTAGTCAAGAGGCTGCTGACTCTGACCTCAAACCCTTGTTCAACCGGTGCCATTTTCTTCGCACTATTTATAAGCACCATTGCAATGCCGAGGATGAGGTCATATTTCCTGCCTTGGATGAACGTGTGAAGAATGTTGCACGGACATATTTCTTGGAACATGAGGGAGAAGGACTTCTTTTTGACCAGTTATTCAAGCTGCTAAATTCTGATTTGCTAAATGAAGAGGGTTATCGAAGAGAATTGGCTTCTTGTACTGGAGCCCTTAGAACATCAATTAGTCAGCATATGTTTAAGGAAGAGGAACAGGTATTCCCCTTGGTTATCGAGAAGTTTTCATTTGAAGAGCAGGCATCATTGGTATGGCAATTTCTATGCAGCATACCAGTTAAGATGATAGCAGAGTTTCTTCCCTGGCTTGCTTCATATGTATCATCAGAGGAACATCAGGATATACTTAGATGCTTGTGCAAGATAATACCAGAAGAGAAACTTCTTCAGCAGGTGGTTTCTGGATGGTTGGAAGGAGCAAAGATCAGACGTAGAAACTGCACACGTGACACTATGGTTCAATGTCAGGATGCTGGGACAGGCAACATAACTGGTCTTGGGGAAAAGGTTTACTGTGCAAATGAACCTCTCAATACAGGAAAAAGGAAACGGATGGACCTAAGCAGCGACCATACCAGCTCCACTGTATCATGCCCTATAGATGAAATATTGCTTTGGCATAAAGCTATAAAGAAAGAGTTGAGTGATTTAGCTGACGTAGCTAGGAAGATACATCTTTCTGGAGAATATTCTGTCTTGTCTGCTTTCAATGTGAGGCTGCAATTTATAACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATTTTCCCTGCTTTAGATGAAGACCTATCTTTCATCCAGGAGCATGCAGATGAAGAACTTCAATTTGAAAAGCTTAGGTGTCTGATAGAAGGTATCCAAATTGCTGGAGCCAACTCATCGTCCACCGAATTTTATATGTTGAGTTCTCATGCTGATCAAATAATGGATACCATACTGAAGCACTTTGAGACTGAAGAAGCACAGGTTCTTCCACTTGCACGAAAGCTTTTTAGCCCCCAAAGACAACGAGAAATACTTTACGAAAGCTTGTGCTTGATGCCCTTGAAACTGATTGAGCCTGTATTACCATGGCTGATGGGATCACTTagtgaagaagaaacaagatCGTTTCTTCAGAATATGTACTTGGCAGCCCCAGCAACAGATTACGCATTGGTTACCCTTTTTTCTGGTTGGGCATGCAAAAGATATTCCAGCAACAGTTGTTTCTCTTCAAGTGTGACAGGTTCATGTCCTGCAGGGGAATTGGTGGGAAATGGAAACACTAAGTCATCATTCTGCAATTGTGAACCTTCAATCAGTCCCaaggaaaaaatttcatccaCTCAACAAGTTGGTTCAGATGGCAGTAGTGGACCTGTCAATCATGGAAACccagaagcaaagaaagagaatgataCTTATTGCCTCACAGGCATTAAAGAAATTCTTAACTTACCGTGTGATGGATCTTGCTCTGCACCTCGATTAGGGGTTAGTGGAAGTCATCTAGGAGTGGGTTCTATAGCCATGGCAAAATCTCTGCGATCCTTATCTGATTGTCCTTCTGCACCTTCGCTCAACTCCAGTCTTTTTACCTGGGAAACTGATACAGCCTCTGCTGAAAGTGGATTTACAGCACGACCTATtgataacatatttaaatttcataaagcCATTTCTAAGGACTTGGAATATCTAGACGCTGAATCTTGCAAACTTAATGATTGTGATGAAATTTTTCTTAGGCAATTCACTGGTAGATTCCGCTTGCTGTGGGGTTTGTATAGAGCTCATAGCAATGCTGAGGATGATATAGTATTTCCAGCATTGGAATCAAAAGAGACTCTCCATAATGTGAGCCACTCTTATACTCTCGATCACAAGCAGGAGGAGAATTTatttgaagatattttttctGGACTCTCTGAGCTTACTCAATTATCTGAATTAATGCATAGTTCATCAGAAAATTTAACCAGCTCCTCTTCTAATCATGCTGGTTGTTCTGAAACAATGCAAAAGTATAATGAGCTTGCTACAAAGATACAGGGCATGTGTAAATCTATTAGAGTGATACTGGATCAACATATTTTCAGGGAGGAGCTTGAATTATGGCCATTGTTTGATAGACATTTCTCTGTGGAAGAACAAGATAAAATTCTTGGCCGCATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGCTTCCATGGGTAACTTCTGCACTTACTCAAGAGGAGCAAAACAAAATGATGGACACATGGAAGCAAGCTACCAAGAACACTATGTTCAGTGAGTGGCTTGATGAATGGTGGGAAGGACCTTCTTCATGCTCAAATACATCTACAACTAGAGATTGTCTTTCACTAGgtaCTGATGCCTGTGAAAGCTCAGACCATTGCTTGCAAGCTTTCAGGCCTGGATGGAAAGATATATTCAGGATGAACCAAAATGAACTTGAATCAGAAATAAGGAAAGTTTCTCGAGATTCAACTCTTGATCCCAGAAGAAAAGCATATCTCATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGCAGGTGAATATGCAAATGGAGAAGGTTTACTAGAATGTGCACCTTCGTTTTATGATTCAGAGAAACAAATCTTCGGTTGTGAgcattacaaaagaaattgtaaacTACGTGCTGCTTGCTGTGGCAAGCTATTCACATGTAGGTTCTGCCATGATAAAGTTAGTGACCATTCAATGGATAGGAAGGCTACAACTGAGATGATGTGCATGCGCTGCCTGCAAATACAGCCAGTTGGACGTTGTTGTATAACACCTTCCTGTGGTGGTTTCTTGATGGCAAAGTACTATTGTAGTATCTGCAAattttttgatgatgaaaGGACAGTTTATCATTGCCCTTTCTGCAATTTATGCCGTCTAGGAAAGGGACTCGGTGAAGACTTCTTTCATTGCATGCAATGCAATTGCTGCCTATCAACAAAATTAGTTGATCACCACTGCAGGGAAAAAGGCCTAGAAACAGACTGTCCTATATGCTGTGATTTTTTATTCACATCTAGTGCATCTGTCAGAGCGCTTCCTTGTGGCCATTTCATGCATTCTGCTTGCTTTCAGGCATATACATGTAGTCACTACGTTTGTCCAATTTGCAGCAAATCTTTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCTCTGTTGGCTTCGGAGCAAATCCCAGAAGAATACCGGAATCACTTtcagGATATACTTTGTAATGACTGCGAGAAGAAGGGCACCGCACGATTCCATTGGCTTTACCACAAGTGTGGGTTTTGTGGATCTTACAATACAAGAGTCATTTA 3677 0.4017 MAMMPFSDGAGGVAIMSGTVNSVDSSPSKNCLKNSLLKSPILIFSFFHKAIRSELESLHRVALDFATSQEAADSDLKPLFNRCHFLRTIYKHHCNAEDEVIFPALDERVKNVARTYFLEHEGEGLLFDQLFKLLNSDLLNEEGYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSFEEQASLVWQFLCSIPVKMIAEFLPWLASYVSSEEHQDILRCLCKIIPEEKLLQQVVSGWLEGAKIRRRNCTRDTMVQCQDAGTGNITGLGEKVYCANEPLNTGKRKRMDLSSDHTSSTVSCPIDEILLWHKAIKKELSDLADVARKIHLSGEYSVLSAFNVRLQFITEVCIFHSIAEDKVIFPALDEDLSFIQEHADEELQFEKLRCLIEGIQIAGANSSSTEFYMLSSHADQIMDTILKHFETEEAQVLPLARKLFSPQRQREILYESLCLMPLKLIEPVLPWLMGSLSEEETRSFLQNMYLAAPATDYALVTLFSGWACKRYSSNSCFSSSVTGSCPAGELVGNGNTKSSFCNCEPSISPKEKISSTQQVGSDGSSGPVNHGNPEAKKENDTYCLTGIKEILNLPCDGSCSAPRLGVSGSHLGVGSIAMAKSLRSLSDCPSAPSLNSSLFTWETDTASAESGFTARPIDNIFKFHKAISKDLEYLDAESCKLNDCDEIFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEENLFEDIFSGLSELTQLSELMHSSSENLTSSSSNHAGCSETMQKYNELATKIQGMCKSIRVILDQHIFREELELWPLFDRHFSVEEQDKILGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFSEWLDEWWEGPSSCSNTSTTRDCLSLGTDACESSDHCLQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSSQATAGEYANGEGLLECAPSFYDSEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLQIQPVGRCCITPSCGGFLMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGEDFFHCMQCNCCLSTKLVDHHCREKGLETDCPICCDFLFTSSASVRALPCGHFMHSACFQAYTCSHYVCPICSKSLGDMAVYFGMLDALLASEQIPEEYRNHFQDILCNDCEKKGTARFHWLYHKCGFCGSYNTRVI 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01711 1225 Pfam Ring finger domain 1118 1160 IPR001841 -
Bva01g01711 1225 MobiDBLite consensus disorder prediction 545 568 - -
Bva01g01711 1225 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Bva01g01711 1225 SMART ring_2 1119 1160 IPR001841 -
Bva01g01711 1225 Pfam Hemerythrin HHE cation binding domain 649 808 IPR012312 -
Bva01g01711 1225 Pfam Hemerythrin HHE cation binding domain 48 174 IPR012312 -
Bva01g01711 1225 Pfam Hemerythrin HHE cation binding domain 302 433 IPR012312 -
Bva01g01711 1225 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Bva01g01711 1225 MobiDBLite consensus disorder prediction 545 561 - -
Bva01g01711 1225 CDD Hr-like 43 172 - -
Bva01g01711 1225 Gene3D nmb1532 protein domain like 646 870 - -
Bva01g01711 1225 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 31 1225 - -
Bva01g01711 1225 SUPERFAMILY RING/U-box 1118 1164 - -
Bva01g01711 1225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1163 IPR013083 -
Bva01g01711 1225 Gene3D nmb1532 protein domain like 304 449 - -
Bva01g01711 1225 Gene3D nmb1532 protein domain like 39 192 - -
Bva01g01711 1225 CDD RING-H2_Pirh2 1118 1161 - -
Bva01g01711 1225 CDD Hr-like 304 431 - -
Bva01g01711 1225 CDD Hr-like 653 807 - -
Bva01g01711 1225 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Bva01g01711 1225 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
Bva01g01711 1225 SUPERFAMILY Zinc hairpin stack 1056 1110 IPR037275 -
Bva01g01711 1225 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 31 1225 - -
Bva01g01711 1225 SUPERFAMILY CHY zinc finger-like 984 1046 IPR037274 GO:0008270
Bva01g01711 1225 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Bva01g01711 1225 Gene3D - 1189 1225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01711 Bva-Chr1 18107002 18114994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01711 39 1225 C2H2 Transcription Factor Family AT3G18290 62.552 0.0 1486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01711 01 18107002 18114994 Bva01g01711 01 18107002 18114994 ECH