Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01659 ATGCACAATAACGAAGCTTCCTCTCCATCCAGCAATGGCGGACTTGGCGCGAACACCACCACCACTACTGGCCAAATGCAGCCAAACCGCTCTGTGTTTCCTGGGCTCTACTCTCCGTTGTACTCTGACAAGCCGTCGTTCTCTGCCGGAAGCGGTATCTCGCTTCACTCGTTCGAAGGAACCTCGGATTTCAAGTACTCTGACTCGGCGAGTCAGAGCCGTCTATATGACTCTTGCGTGATTCAGAAGCATCAGGATATGGTGAACCGCCAAAGTATCTGCCTCAGTCACCTCCTGGAAACTTCGAAATTAGAAGTCGATGCTCTGCGACAAGAGAACATCCATCTTCGTGCTGTGAATCGGGAGCTGAACAACCAGTTGAATCTTGTGCTTCAGGCCTCGGTTCAGAACCAATTTGATGGTTCCTCCGGTCACACCACAGCGTTTGACATTGCAAATGGATTTCGTGGGCTCCATATCGGGGACACCAGAGAAGGGAAAGAGAACTTTGCCGATTGGAAGGACCAGGAAGTGTCTGATGAGAGCCCAACTAGCGTGATTGAGAGCCCTGTGGAAGTGGAGAGGTTCTCGCTGCCAAAGAGCATATCTGTGAGGTCAAATGGGTACTTGAAGATGACCCAGACTGCTGCAAGTGCCAGTAATGCAAGCCGCAACAAAAGCGCCACTCGGCCACGAACTACCCCGAGTCCACTTGATGTTCATAAGGTTTATGTGAACGGAGGGAAGCAAGAACAAGAGCCTCTTGAGATGGTAGTATACAACCAAGGGATGTTCAAAACAGAGCTGTGCAACAAATGGCAGGAGACTGGTACTTGCCCTTATGGAGACCACTGCCAATTTGCTCATGGAATTGACGAGCTCCGCCCAGTGATCCGCCACCCACGCTACAAGACAGAGGTCTGCAGGATGGTCCTTGCCGGCGTTATCTGCCCCTATGGTCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAGGCCATGGCACAGCCTAAATCCAGGGCAATGAAGCTGGAAAAATA 1046 0.5124 MHNNEASSPSSNGGLGANTTTTTGQMQPNRSVFPGLYSPLYSDKPSFSAGSGISLHSFEGTSDFKYSDSASQSRLYDSCVIQKHQDMVNRQSICLSHLLETSKLEVDALRQENIHLRAVNRELNNQLNLVLQASVQNQFDGSSGHTTAFDIANGFRGLHIGDTREGKENFADWKDQEVSDESPTSVIESPVEVERFSLPKSISVRSNGYLKMTQTAASASNASRNKSATRPRTTPSPLDVHKVYVNGGKQEQEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIDELRPVIRHPRYKTEVCRMVLAGVICPYGHRCHFRHALTEQEKAMAQPKSRAMKLEK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01659 348 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Bva01g01659 348 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Bva01g01659 348 MobiDBLite consensus disorder prediction 1 30 - -
Bva01g01659 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 49 340 IPR045877 GO:0003729
Bva01g01659 348 SUPERFAMILY CCCH zinc finger 261 296 IPR036855 GO:0046872
Bva01g01659 348 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Bva01g01659 348 Coils Coil 106 126 - -
Bva01g01659 348 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Bva01g01659 348 MobiDBLite consensus disorder prediction 215 234 - -
Bva01g01659 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 49 340 - -
Bva01g01659 348 SUPERFAMILY CCCH zinc finger 298 332 IPR036855 GO:0046872
Bva01g01659 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 290 IPR000571 GO:0046872
Bva01g01659 348 MobiDBLite consensus disorder prediction 215 240 - -
Bva01g01659 348 Gene3D - 298 334 - -
Bva01g01659 348 Gene3D - 259 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01659 Bva-Chr1 17782339 17785539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01659 66 346 C3H Transcription Factor Family AT1G68200 52.560 3.92e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva01g01659 zf-CCCH 2.8e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01659 01 17782339 17785539 Bva01g01659 01 17782339 17785539 ECH