Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01653 ATGAAGGACCGGCCTCCGCCATCCTCGTATCGCGCCATTTACGTCCCTCCCCACCACCGTCTTCGCTCCGTCATCATCCCCGCCAATGGCAACTCTCCCTCTCCAATTGACTCCAAGTTTCGCGAAAGCCAAGCTGAAGTTTTAAACCCTAAAGCTGCTACTCTGCCTCACTCGAAGACCCAGCTGCAGCAGGAACGAATTCACAAGGGTAATTTGCGCTATGTTTCTGCTTATGGTGATGGCATTTCTGAAGATGGATCGGATCATGGGTCTAACACATCTTCTTTGACGAGTGCTTTCCCCAATGGTAGCCCTGATGAGTGGAAGCGGAAATTAACCTTGCTTTTAAATGACAAGAGTAAGCAAGAGTTGATTTCAAGGGAGAAAAAGGATAGACgtgattttgagaaaatatcagCTTTGGCAACCAGAATGGGATTGTATAgCCATATGTATGCAAAAAAAGTTGTCTTCAGTAAAGTCCCACTGCCAAACTATAGATATGATCTGGATGATAGACGACCGCAGAGGGAgGTGTTCATGCCTTTTAACTTATCAAGAAGAGTTGATGCATATCTTGGAGAATACCTTTCCGAGAAGTCTAAGGTGAAGGGAAGCTTTCCAGATTTTTCCTTAGCCAGAACTAGCAGTACTGGTAGCATTGGTACTGATGAAGGGCTTTTTGAGCAACCTGAGCCACTGCTATCCAGTAAGGTAGTTGTGGAGAAAATTCTTCGTCGGAGAAGTCTAGAAATGCTTGATCAGCAACAAACTTGGCAGGAATCTCCTGAAGGAAGAAGAATGCTGGAATTTGGTAGAAGTCTCCCTGCTTATAAAGAGAAGGAAGCAATGTTGACCGTCATATCAAAGAATCAGGTCGTTATCATCTCAGGTGAAACAGGTTGTGGTAAAACGACACAAATTCCACAGTTCATTTTAGAAACTGAGATAGAATCTATATGTGGAGCTGTTTGTAAGATTATATGTACACAGCCAAGACGCATTTCAGCCATGTCTGTCTCTGAACGAGTTGCCCTTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGGTATAAAGTTCGATTGGAGGGTATGAAAGGGAAAGACACACATATTCTCTTTTGCACCACTGGCATCTTATTGAGAAGATTGCTAGCTGACAGAAACTTAAAAGGTGTAACTCATGTGATTGTGGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTACTGTCCTTAAAGATCTTCTCCCTCACCGACCAGAGCTAcgattgattttgatgagtgCTACCCTAGATGCAGAGCTCTTCTCCTCTTACTTTGATGCTGCTCCGATTATAAAAATTCCGGGCTTCACATATCCTATTAAAAGTCATTTTTTGGAGGACATTCTGGAAATGACAGGATACAGACTGACTCCTTACAATCAAATTGATGACTATGGTCAAGAAAGGTTGTGGAAAATGAGCAAACAAGCTCcgagaaagaggaaaagcCAAATTGTTTCTGCTGTAGAGGATGCACTAAGAGCTGCTGATTTCAAGAATTACAGCCAACAGACACGGGAGTCCTTGTTGTGTTGGAACCCAGACTCTATTGGTTTTAATCTCATAGAGCATATATTATACAATATATGTGAGAATGAAAGACCTGGTgctgttttggtttttatgaCTGGATGGGATGATATAAGCTCGCTGAAAGATAAGCTCCTAATACATCCAATCTTGGGAGATCCAAACCAAGTTTTGTTGCTTGCTTGTCATGGTTCAATGGCTAGTTCAGAGCAGAGGTTAATATTTGAAGAGCCTGAAGATGGTTTGAGGAAAATAGTGCTGGCAACCAATATCGCTGAGACGAGTATTACCATAAATGACGTTGTTTTTGTTCTTGACTGTGGGAAGGCCAAAGAAACATCATATGATGCACTGAACAATACACCCTGCTTGCTTCCGTCCTGGATCTCCAAGGTTTCTGCTCTACAAAGAAGAGGAAGAGCAGGTCGTACTCAGCCTGGAGAATGTTACCATCTCTATCCTAGATGTGTATATAATGCTTTTGTGGAGTATCAATTGGCAGAAATTTTGAGGACGCCTTTGCAATCACTGTGCCTGCAAAtcaaaagtttgaaacttgGAAGTATATCTGAATTCCTTTCAAGAGCTTTGCAGTCACCAGAGTTACTTGCggtGCAAAATGCCATTGaacatttgaaaataattgggGCCTTGGATGAGATTGAAGATCTGACCATTCTAGGGCGCTATTTGACCATTCTTCCGATGGAGCCCAAACTTGGCAAGATGCTTATATTGGGCGCTATTTTCAATTGCCTGGACCCCATATTAACTGTTGCTGCTGGCCTCAGTGCGAGAGATCTTTTCCTGACTCCAATGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTTTCCCGTGATTACAGTGACCACCTTGCTCTTGTAAGGGCTTATGAGAGCTGGAAAGCTGCTGAAATAGACCTTGCAGGATATGAGTACTGttggaaaaattttctttcagcaCAATCAATGAAAGCAATTGATGCCCTTCGACGTGAATTCTTCTCCTTACTTAAGGATATTGGATTAACCGATGGCAATGCAACCACCTGCAATGCGTGGAGCCATGATGTGCATCTTATTCGAGCAGTTATTTGCTATGGCCTATATCCTGGCATTTGCTCTGTTGTGCACAATGAGAAATCGTTTTCTCTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTTGAACTCAGTGAATGCTCGGGAAACTAAAATTCCTTATCCATGGCTAATTTTTAACGAGAAGATAAAAGTGAACTCTGTTTTTCTCCGTGATTCAACGGCTGTGTCTGATTCAATGGTGCTTCTTTTTGGTGGAAGCATATCAAAAGGAGATGCTGATGGTCACCTAAAAATGTTAGGAGGATATCTGGAGTTTTTCATGAAACCTGCTGTTGCTAACATGTATCTAACAATAAGGAGAGAACTTGATAAATTGATTCAGATTAAACTACATCACCCAAGGATGCACATACAAACACATCATGAGCTCCTATCTGCCATTCGGTTGCTGATTTCGGAAGAAAAATCTGAAGGCAGATTTGTATTTGGTCGCCAAATCCCCAAACCATCAGAGCCATTGGTAGTGGCCTCAAAGCCAGCATTGGCTTCAAGGACTGAGAGTGGACCTGGGGGTGATAACTCTAAAAGCCAGCTCCAAACATTGATTACAAGGGCAGGATATGCTGCTCCCAGCTATAAGACTAGGCAATGGAAGAACAATCAGTTTCGAGCCACTATTGAGTTTAATGGAATGCAGATAATGGGTCAACCCtgtaacaagaagaaaagtgcagaaaaagacGCTGCAGCTGAGGCGCTGCAACGGCTGATTGGTGGAAGCCAGACAGCAAATGGCCATGAGTATATCAATCATGTGTCTATGTTgctaaagaaaagtaaaaaagatcaTAACTG 3512 0.4052 MKDRPPPSSYRAIYVPPHHRLRSVIIPANGNSPSPIDSKFRESQAEVLNPKAATLPHSKTQLQQERIHKGNLRYVSAYGDGISEDGSDHGSNTSSLTSAFPNGSPDEWKRKLTLLLNDKSKQELISREKKDRRDFEKISALATRMGLYSHMYAKKVVFSKVPLPNYRYDLDDRRPQREVFMPFNLSRRVDAYLGEYLSEKSKVKGSFPDFSLARTSSTGSIGTDEGLFEQPEPLLSSKVVVEKILRRRSLEMLDQQQTWQESPEGRRMLEFGRSLPAYKEKEAMLTVISKNQVVIISGETGCGKTTQIPQFILETEIESICGAVCKIICTQPRRISAMSVSERVALERGEKLGESVGYKVRLEGMKGKDTHILFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLTVLKDLLPHRPELRLILMSATLDAELFSSYFDAAPIIKIPGFTYPIKSHFLEDILEMTGYRLTPYNQIDDYGQERLWKMSKQAPRKRKSQIVSAVEDALRAADFKNYSQQTRESLLCWNPDSIGFNLIEHILYNICENERPGAVLVFMTGWDDISSLKDKLLIHPILGDPNQVLLLACHGSMASSEQRLIFEEPEDGLRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSALQRRGRAGRTQPGECYHLYPRCVYNAFVEYQLAEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEHLKIIGALDEIEDLTILGRYLTILPMEPKLGKMLILGAIFNCLDPILTVAAGLSARDLFLTPMDKKDLAEAAKSQFSRDYSDHLALVRAYESWKAAEIDLAGYEYCWKNFLSAQSMKAIDALRREFFSLLKDIGLTDGNATTCNAWSHDVHLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYLNSVNARETKIPYPWLIFNEKIKVNSVFLRDSTAVSDSMVLLFGGSISKGDADGHLKMLGGYLEFFMKPAVANMYLTIRRELDKLIQIKLHHPRMHIQTHHELLSAIRLLISEEKSEGRFVFGRQIPKPSEPLVVASKPALASRTESGPGGDNSKSQLQTLITRAGYAAPSYKTRQWKNNQFRATIEFNGMQIMGQPCNKKKSAEKDAAAEALQRLIGGSQTANGHEYINHVSMLLKKSKKDHN 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01653 1170 Pfam Helicase conserved C-terminal domain 540 672 IPR001650 -
Bva01g01653 1170 Gene3D - 715 818 - -
Bva01g01653 1170 CDD SF2_C_RHA 530 681 - -
Bva01g01653 1170 MobiDBLite consensus disorder prediction 86 102 - -
Bva01g01653 1170 Gene3D - 532 692 IPR027417 -
Bva01g01653 1170 Pfam Double-stranded RNA binding motif 1080 1142 IPR014720 -
Bva01g01653 1170 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 891 973 IPR011709 -
Bva01g01653 1170 SMART helicmild6 567 673 IPR001650 -
Bva01g01653 1170 Gene3D - 236 453 IPR027417 -
Bva01g01653 1170 Gene3D - 1063 1146 - -
Bva01g01653 1170 SMART ultradead3 272 461 IPR014001 -
Bva01g01653 1170 CDD DEXHc_RHA-like 291 451 - -
Bva01g01653 1170 Pfam Helicase associated domain (HA2) 736 811 IPR007502 GO:0004386
Bva01g01653 1170 SMART ha2_5 735 825 IPR007502 GO:0004386
Bva01g01653 1170 Pfam DEAD/DEAH box helicase 284 435 IPR011545 GO:0003676|GO:0005524
Bva01g01653 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 833 IPR027417 -
Bva01g01653 1170 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1079 1144 IPR014720 -
Bva01g01653 1170 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 65 1094 - -
Bva01g01653 1170 PANTHER ATP-DEPENDENT RNA HELICASE 65 1094 - -
Bva01g01653 1170 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 713 IPR001650 -
Bva01g01653 1170 SUPERFAMILY dsRNA-binding domain-like 1074 1142 - -
Bva01g01653 1170 MobiDBLite consensus disorder prediction 83 102 - -
Bva01g01653 1170 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 452 IPR014001 -
Bva01g01653 1170 SMART DRBM_3 1080 1143 IPR014720 -
Bva01g01653 1170 MobiDBLite consensus disorder prediction 1063 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01653 Bva-Chr1 17713392 17722979 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01653 01 17713392 17722979 Bva01g01653 01 17713392 17722979 ECH