Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01644 ATGGCCGCGTCGTCGTCTGCAGCGGCCACAACCAATGTTATGCTCGCCATCTTCGAGAAGAAGACGAACCAAATCGATCTCTATCGCCCTCTTCGCAATTATATAGCCTTCCATTACTCCGAGCGCGAAGCCCAGAACCACGAAGACGATCTTCAAACCCTTAAGCAACTCCGTACCGACCTCGAACGCCACCCTGATCCCTCCCTCACCTCTCGTCGAGACCTCCTTCAATTGTATTACAAAGCTCTCTGCTTGGTCGAGACCCGTTTCCCCATTTCCCCTGATCAGGATCACGTCAACACTCTCAGCTTCGTCTGGTTCGATGCGTTTAAGCCCAAACAGAAGGCAACCCAGCAGAACATTCACCTAGAAAAAGCTGCTGTCTTGTTCAATTTAGGTGCTGTTTATAGTCAGATTGGGTTGTCTTGTGATCGGAATACTGTTGATGGTCGGAGGCAGGCCTCACATGCGTTCATTGCAGCTGCTGGGTCTTTTGCTTACCTGAGAGATAATGCCTCCATGAAAGCGTCAATTGGGAGTTCCACAACAGTGGATTTGTCAGTGGAGTGTGCTGGAATGTTGGAGAGATTGATGCTGGCACAGGCACAGGAGTGTGTATTTGAGAATACCATTGCAAAAGGGAGTACTCCGGGTGTTTGTGCCAAGATCTCTAGGCAGGTTGGGCTGTACTATGAGGAAGCTTTAGCTGCCCTGAACGTTGCACCTTTAAGCCAACATTTTGAAAAGGGCTGGGTAGCACATGTACAGTTGAAGGCAGCTTTATTCTATGCAGAAGCTTGCTATAGATATGGGCTTGAGCTAcatgagaaagaagagataGCAGAGGAGATTGCACGGTTGAGAAGTGGGATCAGTGCACTAACTGAGGCAAAGAAAAACTCTAAGGGTGCTGCAGCACAAATTCTGGATGCAATTAGCAAGTTAGAGGCCAATCTTAACCGAAACCTAGAAAGGGCTGTGAAGGAGAATGATAGAGTTTACCTCATGAGAGTTCCAAACCCCAATACCTTAGCACCTCTTCCATCATTTTCCATGGTGAAACCAATGGTGATGAATGAGGTATTAGATGCAAGTAAGGAGAAGATGTTTGCAAGTCTTGTTCCTGATGGCAGTGCAAAGGTTCTCTCCAGGTACACTGAAATGGTAGATGACATTATAAGGACACAGGCTGAAAAGTTACAAGCAGCTAGTGAGCTAACTCGAGTTAGGCTTAAGGAAATGGATCTGCCAGATTCTATTCTAGCTTTGGAGGGAAACTTTTCTCTCCCAACTGAGCTCAAAGAAGATGTGGAGGCCGTGCAGATCTGTGGGGGTCCAGCTGGTTTGGAATCTGAGTTGCAGCAACTCAAGGACCTAAGGAGGGTGAACCAGGAACTATTGATCCAGACTGAGGAGCTATTGCAGAAAGAATCAAGAGAAGATGCTCAATTTAGAAGCCAATTTGGAACAAAGTGGACGAGACCTCAATCTAGTACTCTGACAAAGAACTTGCAGGATAGGTTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCAGAAAGTGATGGTAGGATTGAGCATTCAATTAGAGAATATGCATCACTCATGGCAATACTTGACCGCCGGCCGATTGAATCAGCACTTCCAAGCTTGGCAAGGCCAATAATGTCTTTGGATGCTAATGAAGATGCTATTGTTGGATCCCTCAAGCAGAGTTTGAGGCAACTAGAAACTCTGGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTTaaagatatgaaaagaaaGGATGATATATTGCCAAAATTGATGACATCAACTGGCTCGTATGAGGATCTTTTCAAGAAAGAGATAGCAAAATATGACCATATTTGTGAAGACATAGCTCAAAATATTGAGGCTCAGGAACAGTTGTTGCTGCAGATCCAGGCCCAAAATGACGAATTCTCTGCAATCTTTAATCTTGAAGATTACAAAGCATCGCGTGAAAAATGCTACAAGCAGATTGAAGTTGCCATAGCAAAGTTTCgagaaataaaagataacatCAATGAAGGGTTGAAATTCTATGTTACTCTTCAGGATGCAATCACAAAGGTAAAGCAGCACTGCAGTGACTTTATAATGACCAGAAGCATCCAGAGCAGAGAAATGATTGAAGATGTTCAGAGACAAGTGGCGGGTCTCAGTTTCCAGGATAGCAAAAACACAGGTTCTTTCAACAATAACTACCCTCCGGTGGGACACCAAGCTCAAAGAGCCAGTCCACAAATCGATCCTCGTCCCCAAACACCTTACTATCAGCAGCCACCGGTGGCTGGATATGCTCACCATCCTCCACCATATGGTTCTGCACACCAGCCTCCACCTCCATACCATGTTCCGCCATCGTCAGCTGCTCCATACCCTCCTCAGGCTCATCAGCAGCCACCTGTAAGCCACGAATATGGCCAACCGGCATATCCGGGATGGCGCGGTCCTTATTATAATGCACAAGGACAACAACCTTCAACCGTTCCTCGCCCACCTTATACCATCCCCGGTCCATATCCACCCCCTAACCAAAGTGGCTACTACAGACAACAATA 2588 0.4556 MAASSSAAATTNVMLAIFEKKTNQIDLYRPLRNYIAFHYSEREAQNHEDDLQTLKQLRTDLERHPDPSLTSRRDLLQLYYKALCLVETRFPISPDQDHVNTLSFVWFDAFKPKQKATQQNIHLEKAAVLFNLGAVYSQIGLSCDRNTVDGRRQASHAFIAAAGSFAYLRDNASMKASIGSSTTVDLSVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLSQHFEKGWVAHVQLKAALFYAEACYRYGLELHEKEEIAEEIARLRSGISALTEAKKNSKGAAAQILDAISKLEANLNRNLERAVKENDRVYLMRVPNPNTLAPLPSFSMVKPMVMNEVLDASKEKMFASLVPDGSAKVLSRYTEMVDDIIRTQAEKLQAASELTRVRLKEMDLPDSILALEGNFSLPTELKEDVEAVQICGGPAGLESELQQLKDLRRVNQELLIQTEELLQKESREDAQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIEHSIREYASLMAILDRRPIESALPSLARPIMSLDANEDAIVGSLKQSLRQLETLGAQRAGLEDMLKDMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHICEDIAQNIEAQEQLLLQIQAQNDEFSAIFNLEDYKASREKCYKQIEVAIAKFREIKDNINEGLKFYVTLQDAITKVKQHCSDFIMTRSIQSREMIEDVQRQVAGLSFQDSKNTGSFNNNYPPVGHQAQRASPQIDPRPQTPYYQQPPVAGYAHHPPPYGSAHQPPPPYHVPPSSAAPYPPQAHQQPPVSHEYGQPAYPGWRGPYYNAQGQQPSTVPRPPYTIPGPYPPPNQSGYYRQQ 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01644 862 Pfam BRO1-like domain 14 392 IPR004328 -
Bva01g01644 862 Coils Coil 576 596 - -
Bva01g01644 862 Pfam ALIX V-shaped domain binding to HIV 428 713 IPR025304 GO:0005515
Bva01g01644 862 Coils Coil 625 645 - -
Bva01g01644 862 MobiDBLite consensus disorder prediction 840 854 - -
Bva01g01644 862 MobiDBLite consensus disorder prediction 732 862 - -
Bva01g01644 862 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 6 850 - -
Bva01g01644 862 Gene3D alix/aip1 like domains 8 374 IPR038499 -
Bva01g01644 862 Coils Coil 44 64 - -
Bva01g01644 862 Coils Coil 449 476 - -
Bva01g01644 862 SMART BRO1_2 13 397 IPR004328 -
Bva01g01644 862 PANTHER PCD6 INTERACTING PROTEIN-RELATED 6 850 IPR045251 GO:0071985
Bva01g01644 862 CDD BRO1_Alix_like_1 14 369 - -
Bva01g01644 862 CDD V_Alix_like_1 375 711 - -
Bva01g01644 862 Gene3D alix/aip1 like domains 421 702 - -
Bva01g01644 862 MobiDBLite consensus disorder prediction 774 808 - -
Bva01g01644 862 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Bva01g01644 862 Coils Coil 277 297 - -
Bva01g01644 862 MobiDBLite consensus disorder prediction 732 762 - -
Bva01g01644 862 Coils Coil 309 332 - -
Bva01g01644 862 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01644 Bva-Chr1 17642431 17648408 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01644 01 17642431 17648408 Bva01g01644 01 17642431 17648408 ECH