Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01612 ATGAGGAAGCCTTGCTGTGATAAACAAGACATGAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAGAAGCTCACAGATTACATCCAGAAACACGGCGAGGGTTGCTGGCGAACTCTCCCTCAAGCTGCAGGCCTGCTTCGCTGTGGAAAAAGCTGTAGGCTGAGATGGATAAATTATTTACGGCCAGATGTTAAGAGAGGCAACTTTGCTGACGATGAAGAAGATCTCATCATCAAGCTTCATGCACTGCTAGGCAACCGGTGGTCATTAATAGCTGGAAGATTACCGGGAAGGACAGATAATGAAGTGAAGAACTATTGGAACTCTCATCTTAGAAGAAAGCTCATTAAAATGGGTATTGATCCAAATAATCATCGCATAGGTTGTAAAATCTCACCCCTACAAAATTCAGCAACATTAGATAGCTCAGCATCATCTggctcaaaagaaaatggaaagaacACTGAGCCAACAAAACCCCATGATGGTTGTGGCACTAACTGTGATCTTGTATCAGATGCTGCAAGTGGCTTGGAAGATGAGTCATATAGCTTGCCGGATTTGAACCTTGACCTCAATATGAGCATGGTTTCTCCTTCCCCTTGTGCTCCTCAAGACGACAATAAGAAGCCAATTCATGAATCCAAAACATCAAGAGATCCAcattttttctcctctccAACTCTTCTTCTGTTTCAATA 701 0.408 MRKPCCDKQDMNKGAWSKQEDQKLTDYIQKHGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDVKRGNFADDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLIKMGIDPNNHRIGCKISPLQNSATLDSSASSGSKENGKNTEPTKPHDGCGTNCDLVSDAASGLEDESYSLPDLNLDLNMSMVSPSPCAPQDDNKKPIHESKTSRDPHFFSSPTLLLFQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01612 233 Gene3D - 68 130 - -
Bva01g01612 233 PANTHER MYB TRANSCRIPTION FACTOR 2 233 - -
Bva01g01612 233 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Bva01g01612 233 MobiDBLite consensus disorder prediction 138 153 - -
Bva01g01612 233 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Bva01g01612 233 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Bva01g01612 233 CDD SANT 68 111 IPR001005 -
Bva01g01612 233 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Bva01g01612 233 CDD SANT 15 60 IPR001005 -
Bva01g01612 233 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Bva01g01612 233 MobiDBLite consensus disorder prediction 138 166 - -
Bva01g01612 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Bva01g01612 233 MobiDBLite consensus disorder prediction 195 233 - -
Bva01g01612 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 233 - -
Bva01g01612 233 SMART sant 12 62 IPR001005 -
Bva01g01612 233 SMART sant 65 113 IPR001005 -
Bva01g01612 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Bva01g01612 233 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01612 Bva-Chr1 17428476 17430253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01612 2 200 MYB Transcription Factor Family AT4G09460 55.288 2.65e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva01g01612 Myb_DNA-binding 8e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01612 01 17428476 17430253 Bva01g01612 01 17428476 17430253 ECH
Bva01g01612 01 17428476 17430253 Bva04g00866 04 5677608 5678842 ECH
Bva01g01612 01 17428476 17430253 Bva13g01299 13 6653530 6655003 ECH