Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01611 ATGGCCGGCGGAGTCACCGGCGCCGGAGACCGCACCCCGGAACTCCTCGGCCTAGTTCATGACATCGCCTCCATGTGCAGCGGACCTGGTGCcccctccaccaccaccattgCATCCGACGCTATGTTCAAGAAGGACTGCACCGATCTGGTTCGCCGGATCTCTCTACTCACCCATTTGTTCGAGGAAATTAGGGACTTGAAGCTTTCCGATTCTGGAATTCAGGAAATGGAcgcttcttcctcttcttcaacAACGTCTACTGCTTCTTCCTGGTTCTCTGAGCTAGTGCTTGCGCTTCAGGCAGCTAAGCGCCTTCTTTCGGTGGCCAGAACCTTCCGTTCCAATTGCTCATCTGATGGAGCTGCCAAGACAATTGTCTTCCAATTTCAGTGTGTCACATGGAAATTGGAAAAACTGTTAAGCAACTTACCAATTGACGATATAGAAATCTCAGAGGAAGTTACAGAACAGGTAGAATTGGCAAGAACACAATTGCAACGGGCCACAGAAAGATATGGAGCTATGATTTATGAGTTATCCCAGTCACCAGCTCAAGATATTAACGAGGTTCTTGGAAAATCCATGAATGGACTGCAAAGACAAAAAAGCTTACCTGAAGATACACTAAAACAGGTTAGCATTCCTAGAGTCAATGGATGGAAAAGTTGCAATACACATCTGGCAATTCCTCGCTTGGAAAGGGTGAGGAGCATCCCTGCATCTGCGGAGGCTTCTTTATCTAATGTCAGTGATCCTGGAAGTGGAGAAAATTCTGAGAGACAGAATGTAACTCAAGTTAAAAAGCCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATTTCTTTGGAACCAATGAGGGATCCTGTTATTGTGGCCACAGGACAGACATACGAGAGATCTTATATACAGAGATGGATAGATTGTGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCGAAAATTTAACCCTTACACCAAACTATGTTTTAAGAAGCCTTATCACTCAGTGGTGTATAGATCACAACATCGAGCAGCCAACAGGACTAACAAATGGGAAACTAAAGAAGAGTGATGGATCATTTAGAGATGTTACAGGTGATATAGCAGTCATTGAAGCTCTGGTCCGAAAGCTCTCAAGTCACTCCCTTGAGGAGCGTCGAGCTGCTGTTACTGAAATTCGATCACTTTCCAAACGAAGCACAGACAACAGGATTTTAATCGCAGAAGCAGGAGCTATTCCAGTTTTGGTCAACCTTCTGACATCAGAAGATGTATTAACACAAGAAAATGCAGTTACTTCTATTCTCAACTTGTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGCGCCATTCCATCCATTGTCCAAGTTCTCAGATCTGGAAGCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAGATAATAATTGGTGCTTCAGGAGCAATCCACGCTCTTGTAGACTTGCTCCAAAACGGAAGCCTTAGAGGTAAGAAGGACGCGGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGTAGAGCCATCAGGGCAGGGATCATCACAGCATTGTTGAATATGCTTACAGAATCAAGCAAATCAATGGTCGACGAAGCCTTAACAATTATGTCAGTTCTTGCCAGTCACCAAGAGGCGAAGGTTGCCATTGTTAAAGCCAGCACTATACCTGTTCTAATAGATCTCTTGAGAACAGGACTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTGCTTGCCTTGTGCAAGAGGGATAGTGAAAATCTTGCTTGTATAAGCAGACTTGGTGCTGTGATACCCTTGACAGAACTTGCCAAAAGTGGCACAGAGAGAGCTAAGAGGAAGGCTACATCATTATTGGAGCATCTTCGAAAGTTGCAGCAACTTTG 1964 0.4323 MAGGVTGAGDRTPELLGLVHDIASMCSGPGAPSTTTIASDAMFKKDCTDLVRRISLLTHLFEEIRDLKLSDSGIQEMDASSSSSTTSTASSWFSELVLALQAAKRLLSVARTFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPIDDIEISEEVTEQVELARTQLQRATERYGAMIYELSQSPAQDINEVLGKSMNGLQRQKSLPEDTLKQVSIPRVNGWKSCNTHLAIPRLERVRSIPASAEASLSNVSDPGSGENSERQNVTQVKKPEAIVIPEDFLCPISLEPMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLENLTLTPNYVLRSLITQWCIDHNIEQPTGLTNGKLKKSDGSFRDVTGDIAVIEALVRKLSSHSLEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRSGSMEARENAAATLFSLSLADENKIIIGASGAIHALVDLLQNGSLRGKKDAATALFNLCIYQGNKGRAIRAGIITALLNMLTESSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDSENLACISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01611 654 Gene3D - 353 449 IPR011989 -
Bva01g01611 654 PANTHER U BOX DOMAIN-CONTAINING 18 651 - -
Bva01g01611 654 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Bva01g01611 654 Pfam Armadillo/beta-catenin-like repeat 405 443 IPR000225 GO:0005515
Bva01g01611 654 Pfam Armadillo/beta-catenin-like repeat 487 525 IPR000225 GO:0005515
Bva01g01611 654 CDD RING-Ubox_PUB 279 321 IPR045210 -
Bva01g01611 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Bva01g01611 654 Gene3D - 450 552 IPR011989 -
Bva01g01611 654 SUPERFAMILY ARM repeat 374 648 IPR016024 -
Bva01g01611 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Bva01g01611 654 SMART arm_5 568 608 IPR000225 GO:0005515
Bva01g01611 654 SMART arm_5 527 567 IPR000225 GO:0005515
Bva01g01611 654 SMART arm_5 610 650 IPR000225 GO:0005515
Bva01g01611 654 SMART arm_5 486 526 IPR000225 GO:0005515
Bva01g01611 654 SMART arm_5 404 444 IPR000225 GO:0005515
Bva01g01611 654 SMART arm_5 445 485 IPR000225 GO:0005515
Bva01g01611 654 Coils Coil 634 654 - -
Bva01g01611 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 456 498 IPR000225 GO:0005515
Bva01g01611 654 Coils Coil 152 172 - -
Bva01g01611 654 SUPERFAMILY RING/U-box 274 349 - -
Bva01g01611 654 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 18 651 - -
Bva01g01611 654 MobiDBLite consensus disorder prediction 244 265 - -
Bva01g01611 654 Gene3D - 553 653 IPR011989 -
Bva01g01611 654 Pfam U-box domain 275 345 IPR003613 GO:0004842|GO:0016567
Bva01g01611 654 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01611 Bva-Chr1 17408205 17411582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01611 1 653 U-box Gene Family AT1G23030 61.621 0.0 728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01611 01 17408205 17411582 Bva01g01611 01 17408205 17411582 ECH