Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01599 ATGGCGGTTTTACCCAGAAACTCTTCTAGCTTGGAATTGTCCATCTCTGTCCCTGGCTTTGCTTCTTCAccatctcttccttcatctgTGAGAGAgttaagcttggacataaaccAAATGCCCTCAGAGGAAGAATGGATGGCATCAAACATGGAATTAatggatgaagaagaaagcagCAATGGAGGCCCTCCCCGGAAGAAACTTCGCCTCACAAAGGAACAGTCTCGTCTTCTTGAAGAAAGCTTCAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGACTTTGGCAATGCAGTTGAAGCTGAGACCAAGGCAGGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAACTGAAGCAGACAGAGATGGAGTGTGAATACTTGAAGAGATGGTTTGGTTCATTAAGAGAGCAGAACAGAAGACTGCAGAGAGAGGTTGAAGAACTGAGAGCCATGAAAGTGGGACCGCCCACTATAATATCTCCTCACACTTGTCAGCCAATGCCGGCATCAACCCTAACAATGTGTCCTTGCTGCGAGAGGGTCACCACCACTAATCTCGACAGCGGCCCCACCACCGCGGCCGCCGCTTTGTCCTCTAAAGTCCCGGCGCCGACCATCCAGTCACATCAACCTTCGGCGGCTTGCTA 659 0.4583 MAVLPRNSSSLELSISVPGFASSPSLPSSVRELSLDINQMPSEEEWMASNMELMDEEESSNGGPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKETLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLREQNRRLQREVEELRAMKVGPPTIISPHTCQPMPASTLTMCPCCERVTTTNLDSGPTTAAAALSSKVPAPTIQSHQPSAAC 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01599 219 CDD homeodomain 65 123 IPR001356 GO:0003677
Bva01g01599 219 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Bva01g01599 219 PANTHER - 1 201 - -
Bva01g01599 219 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Bva01g01599 219 Gene3D - 58 128 - -
Bva01g01599 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 201 - -
Bva01g01599 219 SMART HOX_1 64 126 IPR001356 GO:0003677
Bva01g01599 219 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Bva01g01599 219 SUPERFAMILY Homeodomain-like 48 123 IPR009057 -
Bva01g01599 219 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Bva01g01599 219 Coils Coil 135 155 - -
Bva01g01599 219 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01599 Bva-Chr1 17291176 17294752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01599 34 201 Homeobox Transcription Factor Family AT1G70920 62.209 5.81e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva01g01599 Homeodomain 3.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01599 01 17291176 17294752 Bva01g01599 01 17291176 17294752 ECH