Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01580 ATGGATGACGAAGTGGTTCAGCGAGTGTTCCAAGAAGGAGGCCGCGACTTCTTCCAGCAACAACCTTCAACTTCATCGTCTTCTTCCTCCATCCTCCAATCTCTCCCTCTCCACGTGTCTTTTGACCATGGCTATTATTTATTGGTAAAATCTATCCAAGAACTTcgagagaaaaaagagggtCTTGTTACAGTTGGCATTGGTGGACCAAGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTCATTGGTTGTACTCTCATTTCGATGGAAAATTATCGAGATGGAGCAGATGAAGGGAATGATCTAGACTCTATAGATTTTGATACCTTGGTCAAGAATCTTGAGGATTTGACAAAAGGCGATGATACATTAATCCCAGTTTTTGACTATCAGCAAAAGAGACGTATTGGCTCTAAAGCAATACAGAGTACTTCAGTGGGGGTGGTAATAGTTGATGGTACGTACGCTCTGCATGCAAAACTGCGGTCCTTACTGGATATTCGAGTTGCTGTGGTCGGTGGTGTTCATTTTAACCTACTTTCCAAAGTTCACTATGATATTGGAGACTCTTGTTCGCTGGATTACCTTATTGACAGCATTTTCCCATTATTTAGGAAGCACATTGAGCCAGATCTTCACCATGCACAGATCAGAATTAACAACAGCTTTATGTCATCATTTAGAGAAGCAATCTACAAGGTGAAATGTAGAAGTGAGTCCCCTGACGGACATTCAGGTTCTGTTCTTCAAGGAAATGAAACCCAAACAGATAATTTTATTGAGATGTACCTTAGACCTCCTTCAGCTGGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTACCTGGCACTTGGTGACCAGAGGATTGTTGACAAACACTTCATTATCAGACCTAAAGCTGAGTTTGAgGTTGGACGAATGACATTGGGTGGACTACTGGCCCTTGGGTACACTGTTGTGGTTAGTTATAAACGTGCATCTACAACAGTTGATTACGGCAGCGTTTCTATGTCCTTTGAAACCATTGATGCTCTTGGTGAGACATTCATGGTGCTGAGAGGGACCAATAGGAAAACAGTTGGAAAAGAAGCGTTAAGGATGGGTATAAATGGACCTTGGATCACTAAATCATATCTAGAAATGATTCTTGAGAGAAAAGGTGTACCTCGTCTCAGTACACCACCACTTGTGTCTAATGCATCTGTGCCTGGtaatcaagaaagagcaatTATTGCACCAACACCAATTCGGGTGACGCCTAACCTTGTTACTGGACTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAACAAAATCTAAAATGGAACCTATAGTAGCTACTTGGCATTTCATATCTTCTGATTCATCTCAGCCTAACAACTCTGTCATAGATCCTTTATCTTTCAGGGATAGCATGAGGCTTGCTCCAATGCCCGATTCATATGACCTAGATAGGGGATTGCTTTTGTCGGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGCACTCCAATCATTGTTGGAATCGGTGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTACAAACGAGTAAAGgattttaaatatgatgaCTTCAGCTCACTTGATTTGTCTTTGCTATCTAAGAATATTGATGACATAAGGAATGGTCGAAGAACAAGAGTACCTATTTTTGACTTGGAAAGCGGTGCTCGGAGTGGTTTCAAGGAACTCGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGGGTTTATGCTCTGCATCCtgatattcgaatatcacTTGACTTGTGGATTGCTGTTGTAGGAGGAGTTCATTCACATTTGATTTCTCGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAGAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAGCACATTGAACCACATCTTGTTCATGCCCATCTTAAAATTCGGAATGACTTTGACCCGGTGCTTTCTCCTGAGAGTTCATTGTTCGTATTGAAGAGTAACAAGCAAGTAGCTTATCAAgatattcttaaaattcttGATCCAGCAAAATTTTGCAGCTCTGTTCAGAATttcattgatatatatttaaggcTTCCTGGTATCCCCTCTAATGGGCAGTTAACGGAGGGTGATTGTATACGAGTCAGAATATGCGAAGGGAGATTTGCATTATTGATACGTGAGCCTATCAGAGAAGGAAATTTCATCATTCAGCCTAAGGTGGATTTTGATATTAGCATTAGTACAGTTGCTGGTCTTCTTAATCTTGGGTATCAGGCGGTAGCGTACATTGAAGCATCTGCATTCATCTACCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGGTGTATCTGGTCCATACATTCAGATCAAGGGGGTAAGTAAAGATGCTGTCGCCGAAGCTGGAACGTTGCTTAAATTGGATAGTGCATATACTACTAAGAGTTATCTGCAAATCATTTTGGAAAGTTTACCAGCAATCGAAAGAACCTCTGGCCGGATTTACTCTCAGCAATCAGCAAGACTGCAAGAAATTGTCGAATTTATACAATCTCAGGGAAATAGTTCGGCTTCAGAATCCTCGCCGAGGAGGGTGGTCTCTCCGGTTGAAGGGGTTATTGAGGAGATGCAGTCAAGGATCAGAAGGCTTGAGCGGTGGCTCGCCATAAATACAGTTCTATGGACATTTTTAATGTCTGCGCTTGTTGGTTATTCACTCTATCAAAGGAAGCGTCAATG 2858 0.4031 MDDEVVQRVFQEGGRDFFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTLISMENYRDGADEGNDLDSIDFDTLVKNLEDLTKGDDTLIPVFDYQQKRRIGSKAIQSTSVGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFNLLSKVHYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFMSSFREAIYKVKCRSESPDGHSGSVLQGNETQTDNFIEMYLRPPSAGEEARINDWIKVRQSGIRYYLALGDQRIVDKHFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVDYGSVSMSFETIDALGETFMVLRGTNRKTVGKEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNASVPGNQERAIIAPTPIRVTPNLVTGLEDLSQPWTRSPTKSKMEPIVATWHFISSDSSQPNNSVIDPLSFRDSMRLAPMPDSYDLDRGLLLSVQAIQALLENKGTPIIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKRVKDFKYDDFSSLDLSLLSKNIDDIRNGRRTRVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSVQNFIDIYLRLPGIPSNGQLTEGDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQGVSGPYIQIKGVSKDAVAEAGTLLKLDSAYTTKSYLQIILESLPAIERTSGRIYSQQSARLQEIVEFIQSQGNSSASESSPRRVVSPVEGVIEEMQSRIRRLERWLAINTVLWTFLMSALVGYSLYQRKRQ 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01580 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 481 604 - -
Bva01g01580 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 424 - -
Bva01g01580 952 Gene3D - 63 241 IPR027417 -
Bva01g01580 952 PRINTS Uridine kinase signature 544 555 - -
Bva01g01580 952 PRINTS Uridine kinase signature 517 534 - -
Bva01g01580 952 PRINTS Uridine kinase signature 638 648 - -
Bva01g01580 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 687 IPR027417 -
Bva01g01580 952 SMART AAA_5 516 660 IPR003593 -
Bva01g01580 952 SMART AAA_5 61 211 IPR003593 -
Bva01g01580 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Bva01g01580 952 PANTHER URIDINE KINASE 481 604 - -
Bva01g01580 952 PANTHER URIDINE KINASE 604 943 - -
Bva01g01580 952 PANTHER URIDINE KINASE 2 424 - -
Bva01g01580 952 Gene3D - 516 693 IPR027417 -
Bva01g01580 952 ProSiteProfiles CYTH domain profile. 693 862 IPR023577 -
Bva01g01580 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 604 943 - -
Bva01g01580 952 Gene3D - 700 864 - -
Bva01g01580 952 CDD UMPK_like 64 226 - -
Bva01g01580 952 CDD UMPK_like 519 687 - -
Bva01g01580 952 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Bva01g01580 952 Pfam Phosphoribulokinase / Uridine kinase family 65 223 IPR006083 GO:0005524|GO:0016301
Bva01g01580 952 SUPERFAMILY CYTH-like phosphatases 723 859 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01580 Bva-Chr1 17178552 17190601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01580 512 715 PRT Gene Family AT1G55810 25.229 6.86e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01580 01 17178552 17190601 Bva01g01580 01 17178552 17190601 ECH