Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01579 ATGGTGAATAAGAATATTCCAGACCCTCCGAACTTTAAGAAATACGGTGTTCCTTTCTACTCAGTCGCATGGGTTCCACCCGCGGTTATCAGATTACACCAAAATCCACCGCCCGATGAAGTTTCCGGCGACGACGCCAAGTCAGATCCGCCGCCGGAGCCTGAGGTGGTGAAACAGACCGGTGAGCATTACTTGGCCTTCGCTGGTGGCGGTGGAGAAGGCCGCAGCGGTATCCCCAATGCTGTGTTGCTTGCTGACTTCCATGTTGAATCTAATTCGCTCTCTGATCAGGCTGTGGGTAGGCTTGGAACTGATTCTGATTTGCCTTATAGAATGGCAGTCAATCCCGGAGGGGATGGCATTATTTGTGCAATGTCAAATGGTTGCAGATGGTTTGAATGGGATAGAAATGATAGTGCAGAAATTCATAAGTTGAGTTTGAAGAAATCTGAAAAGGTACTCACCCAGTTGGAGGATGTTGGACAGCAGTTAGCACTGGCATTTAATAATGATGGTACTGCATTAGCTACTGGTGGAGAGGATGGCAATCTTAGGGTTTTCAAGTGGCCCAGCATGGAAATTATTCTCCATGAGACTAAAGCTCATTCTACCATAAAAGACTTGCATTTCAGTTCTGATGGTAAATTGCTTGTTTCTTTGGGAAGTGCCGGCCCTTGCAGGGTTTGGGATCTGTCTTCAACAATGGTCTTGACTTCTctatcaaatgaaaatCGTGAAGTTTTTAGCTCATGcagattttctcaaattaatgACGGGACTCAGGTTCTGTATATTGCTGCCATGACAGACAAAGCTGGAAGCATTCTGACCTGGGATACAAAGACATGGGAAAGGACAGGATCAAAGCATATTATTCGTGACCCTATCTCTGCCTTGAATGTCTCAGCCGATGGGAAGTTCCTTGCATgTGGAACGCCTTCAGGAGATATCGTTGTtgtaaattcaacaaaattgcAGATTCAGACAATAATCAAAAAGGCTCACCTTGGCGTAGTAACTGCATTGACATTCTCTCCTGATTCAAGAGTCTTGGCTTCTGTATCCTTGGACTCAAGTGCGAGGGTGACCATAATCGatgataagaagaaaaaaggaGGATCGGGCTTGTGGATTACACTATTCATCATCTTACTTGCTATAGTTGTGTACTACCTGAAGCTCGAAGGGATTGTAAAGTG 1199 0.432 MVNKNIPDPPNFKKYGVPFYSVAWVPPAVIRLHQNPPPDEVSGDDAKSDPPPEPEVVKQTGEHYLAFAGGGGEGRSGIPNAVLLADFHVESNSLSDQAVGRLGTDSDLPYRMAVNPGGDGIICAMSNGCRWFEWDRNDSAEIHKLSLKKSEKVLTQLEDVGQQLALAFNNDGTALATGGEDGNLRVFKWPSMEIILHETKAHSTIKDLHFSSDGKLLVSLGSAGPCRVWDLSSTMVLTSLSNENREVFSSCRFSQINDGTQVLYIAAMTDKAGSILTWDTKTWERTGSKHIIRDPISALNVSADGKFLACGTPSGDIVVVNSTKLQIQTIIKKAHLGVVTALTFSPDSRVLASVSLDSSARVTIIDDKKKKGGSGLWITLFIILLAIVVYYLKLEGIVK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01579 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 362 IPR001680 GO:0005515
Bva01g01579 399 PANTHER PROLACTIN REGULATORY ELEMENT BINDING PROTEIN 7 397 IPR045260 GO:0005085
Bva01g01579 399 SUPERFAMILY WD40 repeat-like 104 367 IPR036322 GO:0005515
Bva01g01579 399 PANTHER SEC12P-LIKE 2 PROTEIN-RELATED 7 397 - -
Bva01g01579 399 SMART WD40_4 323 366 IPR001680 GO:0005515
Bva01g01579 399 SMART WD40_4 282 321 IPR001680 GO:0005515
Bva01g01579 399 SMART WD40_4 192 230 IPR001680 GO:0005515
Bva01g01579 399 SMART WD40_4 150 188 IPR001680 GO:0005515
Bva01g01579 399 SMART WD40_4 95 135 IPR001680 GO:0005515
Bva01g01579 399 Gene3D - 55 370 IPR015943 GO:0005515
Bva01g01579 399 MobiDBLite consensus disorder prediction 31 57 - -
Bva01g01579 399 MobiDBLite consensus disorder prediction 38 52 - -
Bva01g01579 399 Pfam WD domain, G-beta repeat 165 187 IPR001680 GO:0005515
Bva01g01579 399 Pfam WD domain, G-beta repeat 333 362 IPR001680 GO:0005515
Bva01g01579 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01579 Bva-Chr1 17172812 17177566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g01579 164 311 Miscellaneous Gene Families AT5G08390 25.503 4.39e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01579 01 17172812 17177566 Bva01g01579 01 17172812 17177566 ECH